Evidence map›Paper›PMID 39755698›Full record

ArticleNature communications2025

Connecting genomic results for psychiatric disorders to human brain cell types and regions reveals convergence with functional connectivity.

Shuyang Yao, Arvid Harder, Fahimeh Darki, Yu-Wei Chang, Ang Li, Kasra Nikouei, Giovanni Volpe, Johan N Lundström, Jian Zeng, Naomi R Wray and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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  6. From molecules to minds: Integrative multi-omics in psychiatry.Journal of mood and anxiety disorders · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Shuyang YaoDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0001-9669-4470
Arvid Harder *Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden.
Fahimeh Darki *Department of Clinical Neuroscience, Karolinska Institutet, Stockholm, Sweden.
Yu-Wei ChangDepartment of Physics, University of Gothenburg, Gothenburg, Sweden.
Ang LiInstitute for Molecular Bioscience, University of Queensland, Brisbane, Australia.ORCID 0000-0002-1186-3448
Kasra NikoueiDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden.
Giovanni VolpeDepartment of Physics, University of Gothenburg, Gothenburg, Sweden.ORCID 0000-0001-5057-1846
Johan N LundströmDepartment of Clinical Neuroscience, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0002-3529-8981
Jian ZengInstitute for Molecular Bioscience, University of Queensland, Brisbane, Australia.
Naomi R WrayInstitute for Molecular Bioscience, University of Queensland, Brisbane, Australia.ORCID 0000-0001-7421-3357
Yi LuDepartment of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0001-9933-3654
Patrick F SullivanDepartment of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden. pfsulliv@med.unc.edu.ORCID 0000-0002-6619-873X
Jens Hjerling-LefflerDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden. jens.hjerling-leffler@ki.se.ORCID 0000-0002-4539-1776

Funding

A Trans-Nordic Study of Extreme Major DepressionR01MH123724 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI PATRICK F SULLIVAN, Lu Yi · 2020 to 2026
$4.7M
1/7 PGC: Advancing Discovery and ImpactR01MH124871 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BULIK, CYNTHIA M, SULLIVAN, PATRICK F · 2021 to 2025
$3.5M
2/2 Genetics at an extreme: an efficient genomic study of individuals with clinically severe major depression receiving ECTR01MH121545 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SULLIVAN, PATRICK F · 2019 to 2023
$2.9M
EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 101042183EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 819540Hjärnfonden (Swedish Brain Foundation) FO2018-0272NIMH NIH HHS R01 MH121545NIMH NIH HHS R01 MH123724NIMH NIH HHS R01 MH124871Vetenskapsrådet (Swedish Research Council) 2018-00799Vetenskapsrådet (Swedish Research Council) D0886501
6 · The paper itself

Abstract

Identifying cell types and brain regions critical for psychiatric disorders and brain traits is essential for targeted neurobiological research. By integrating genomic insights from genome-wide association studies with a comprehensive single-cell transcriptomic atlas of the adult human brain, we prioritized specific neuronal clusters significantly enriched for the SNP-heritabilities for schizophrenia, bipolar disorder, and major depressive disorder along with intelligence, education, and neuroticism. Extrapolation of cell-type results to brain regions reveals the whole-brain impact of schizophrenia genetic risk, with subregions in the hippocampus and amygdala exhibiting the most significant enrichment of SNP-heritability. Using functional MRI connectivity, we further confirmed the significance of the central and lateral amygdala, hippocampal body, and prefrontal cortex in distinguishing schizophrenia cases from controls. Our findings underscore the value of single-cell transcriptomics in understanding the polygenicity of psychiatric disorders and suggest a promising alignment of genomic, transcriptomic, and brain imaging modalities for identifying common biological targets.

Indexed as

Bipolar DisorderBrainGenome-Wide Association StudyMagnetic Resonance ImagingMajor Depressive DisorderMental DisordersPolymorphism, Single NucleotideSchizophreniaAdultAmygdalaFemaleGenetic Predisposition to DiseaseGenomicsHippocampusHumansMale

Identifiers

PMID39755698
PMCPMC11700164

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.