Evidence map›Paper›PMID 39753671›Full record

ArticleNature microbiology2025

Bacteria use exogenous peptidoglycan as a danger signal to trigger biofilm formation.

Sanika Vaidya, Dibya Saha, Daniel K H Rode, Gabriel Torrens, Mads F Hansen, Praveen K Singh, Eric Jelli, Kazuki Nosho, Hannah Jeckel, Stephan Göttig and 2 more

Abstract read
In one paragraph

Article in Nature microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Synergistic eradication of NDM-1Materials today. Bio · 2026
    Article
  2. Article
  3. Article
  4. Copper-driven mutualism ofMicrobiology (Reading, England) · 2026
    Article
  5. Article
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  7. Article
  8. Article
  9. Article
  10. Review
  11. A quorum-sensing molecule fromProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  12. Curcumin-mediated photodynamic inactivation ofCurrent research in food science · 2026
    Article
  13. Review
  14. Review
  15. Complementary killing activities ofAntimicrobial agents and chemotherapy · 2025
    Article
  16. Article
  17. Direct Quantification of Protein-Protein Interactions in Living Bacterial Cells.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  18. d-Histidine inhibitsJournal of oral microbiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Sanika VaidyaMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.ORCID http://orcid.org/0000-0001-6877-617X
Dibya Saha *Biozentrum, University of Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0002-9891-2926
Daniel K H Rode *Biozentrum, University of Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0002-2950-9340
Gabriel TorrensThe Laboratory for Molecular Infection Medicine Sweden (MIMS), Umeå Center for Microbial Research (UCMR), Science for Life Laboratory (SciLifeLab), Department of Molecular Biology, Umeå University, Umeå, Sweden.ORCID http://orcid.org/0000-0002-0450-1430
Mads F HansenMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.ORCID http://orcid.org/0000-0001-9283-304X
Praveen K SinghMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.
Eric JelliMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.
Kazuki NoshoBiozentrum, University of Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0002-4811-1397
Hannah JeckelBiozentrum, University of Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0002-7080-4907
Stephan GöttigInstitute of Medical Microbiology and Infection Control, University Hospital Frankfurt, Frankfurt am Main, Germany.ORCID http://orcid.org/0000-0001-6896-5309
Felipe CavaThe Laboratory for Molecular Infection Medicine Sweden (MIMS), Umeå Center for Microbial Research (UCMR), Science for Life Laboratory (SciLifeLab), Department of Molecular Biology, Umeå University, Umeå, Sweden.ORCID http://orcid.org/0000-0001-5995-718X
Knut DrescherBiozentrum, University of Basel, Basel, Switzerland. knut.drescher@unibas.ch.ORCID http://orcid.org/0000-0002-7340-2444

Funding

Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) TARGET-BiofilmsDeutsche Forschungsgemeinschaft (German Research Foundation) DR 982/5-1Deutsche Forschungsgemeinschaft (German Research Foundation) DR 982/6-1EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 716734Max-Planck-Gesellschaft (Max Planck Society) IMPRS-MicSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 51NF40_180541Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) TMCG-3_213801
6 · The paper itself

Abstract

For any organism, survival is enhanced by the ability to sense and respond to threats in advance. For bacteria, danger sensing among kin cells has been observed, but the presence or impacts of general danger signals are poorly understood. Here we show that different bacterial species use exogenous peptidoglycan fragments, which are released by nearby kin or non-kin cell lysis, as a general danger signal. Using microscopy and gene expression profiling of Vibrio cholerae, we find that even brief signal exposure results in a regulatory response that causes three-dimensional biofilm formation, which protects cells from a broad range of stresses, including bacteriophage predation. A diverse set of species (Pseudomonas aeruginosa, Acinetobacter baumannii, Staphylococcus aureus, Enterococcus faecalis) also respond to exogenous peptidoglycan by forming biofilms. As peptidoglycan from different Gram-negative and Gram-positive species triggered three-dimensional biofilm formation, we propose that this danger signal and danger response are conserved among bacteria.

Indexed as

BacteriaBiofilmsPeptidoglycanVibrio choleraeGene Expression ProfilingGene Expression Regulation, BacterialPseudomonas aeruginosaSignal TransductionStaphylococcus aureusPeptidoglycan

Identifiers

PMID39753671
PMCPMC11726461

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.