Evidence map›Paper›PMID 39749417›Full record

ArticlePhysiologia plantarum

Amino acid substrate specificities and tissue expression profiles of the nine CYP79A encoding genes in Sorghum bicolor.

Donka Teneva Koleva, Mengqi Liu, Barbara Dusak, Stavaniya Ghosh, Camilla Timmermann Krogh, Ida Rye Hellebek, Mathilde Troensegaard Cortsen, Mohammed Saddik Motawie, Flemming Steen Jørgensen, Brian Adam McKinley and 3 more

Abstract read
In one paragraph

Article in Physiologia plantarum. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Small Signaling Peptides inPlant direct · 2026
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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Donka Teneva KolevaPlant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C, Copenhagen, Denmark.
Mengqi LiuPlant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C, Copenhagen, Denmark.
Barbara DusakPlant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C, Copenhagen, Denmark.
Stavaniya GhoshPlant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C, Copenhagen, Denmark.
Camilla Timmermann KroghPlant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C, Copenhagen, Denmark.
Ida Rye HellebekPlant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C, Copenhagen, Denmark.
Mathilde Troensegaard CortsenPlant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C, Copenhagen, Denmark.
Mohammed Saddik MotawiePlant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C, Copenhagen, Denmark.
Flemming Steen JørgensenDepartment of Drug Design and Pharmacology, University of Copenhagen, Copenhagen Ø, Denmark.
Brian Adam McKinleyDepartment of Biochemistry & Biophysics, Texas A&M University, College Station, TX, USA.
John E MulletDepartment of Biochemistry & Biophysics, Texas A&M University, College Station, TX, USA.
Mette SørensenPlant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C, Copenhagen, Denmark.
Birger Lindberg MøllerPlant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg C, Copenhagen, Denmark.ORCID https://orcid.org/0000-0002-3252-3119

Funding

Carlsbergfondet CF19-0301Carlsbergfondet CF20-0352DOE Great Lakes Bioenergy Research Center (DOE BER Office of Science Grant/Award) DE-SC00118409Novo Nordisk Fonden NNF21OC0071074Villum Fonden
6 · The paper itself

Abstract

Cytochrome P450s of the CYP79 family catalyze two N-hydroxylation reactions, converting a selected number of amino acids into the corresponding oximes. The sorghum genome (Sorghum bicolor) harbours nine CYP79A encoding genes, and here sequence comparisons of the CYP79As along with their substrate recognition sites (SRSs) are provided. The substrate specificity of previously uncharacterized CYP79As was investigated by transient expression in Nicotiana benthamiana and subsequent transformation of the oximes formed into the corresponding stable oxime glucosides catalyzed by endogenous UDPG-glucosyltransferases (UGTs). CYP79A61 uses phenylalanine as a substrate, whereas CYP79A91, CYP79A93, and CYP79A95 use valine and isoleucine as substrates, with CYP79A93 showing the ability also to use phenylalanine. CYP79A94 uses isoleucine as a substrate. Analysis of 249 sorghum transcriptomes from two different sorghum cultivars showed the expression levels and tissue-specific expression of the CYP79As. CYP79A1 is the committed gene in dhurrin formation and was the highest expressed gene in most tissues/organs. CYP79A61 was primarily expressed in fully developed leaf blades and leaf sheaths. CYP79A91 and CYP79A92 were expressed mainly in roots >200 cm below ground, while CYP79A93 and CYP79A94 were most highly expressed in the leaf collar and leaf sheath, respectively. The possible signalling effects of the oximes and their metabolites produced in different sorghum tissues are discussed.

Indexed as

Cytochrome P-450 Enzyme SystemGene Expression Regulation, PlantPlant ProteinsSorghumAmino AcidsAmino Acid SequenceNicotianaNitrilesPhylogenyPlant LeavesSubstrate SpecificityTranscriptomeAmino AcidsCytochrome P-450 Enzyme SystemdhurrinNitrilesPlant Proteins

Identifiers

PMID39749417
PMCPMC11696484

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.