Evidence map›Paper›PMID 39749377›Full record

ArticleJournal of veterinary science2025

Whole genome sequencing analysis of enteropathogenic

Jae Young Oh, Kyung-Hyo Do, Jae Hong Jeong, SuMin Kwak, Sujin Choe, Dongheui An, Jong-Chan Chae, Kwangjun Lee, Kwang-Won Seo

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Journal of veterinary science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Nanopore sequencing in veterinary medicine: from concepts to clinical applications.Frontiers in cellular and infection microbiology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jae Young Oh *Division of Biotechnology, Jeonbuk National University, Iksan 54596, Korea.ORCID https://orcid.org/0000-0001-8154-8577
Kyung-Hyo Do *College of Veterinary Medicine, Chungbuk National University, Cheongju 28644, Korea.ORCID https://orcid.org/0000-0001-6080-0374
Jae Hong JeongDivision of Biotechnology, Jeonbuk National University, Iksan 54596, Korea.ORCID https://orcid.org/0009-0009-9921-4386
SuMin KwakDivision of Biotechnology, Jeonbuk National University, Iksan 54596, Korea.ORCID https://orcid.org/0009-0008-0448-2269
Sujin ChoeCollege of Veterinary Medicine, Chungbuk National University, Cheongju 28644, Korea.ORCID https://orcid.org/0009-0006-8828-6702
Dongheui AnSeegene Medical Foundation, Seoul 04805, Korea.ORCID https://orcid.org/0000-0003-0619-0960
Jong-Chan ChaeDivision of Biotechnology, Jeonbuk National University, Iksan 54596, Korea.ORCID https://orcid.org/0000-0002-4422-9312
Kwangjun LeeDivision of Zoonotic and Vector Borne Disease Research, National Institute of Health, Cheongju 28159, Korea. kwangjun@korea.kr.ORCID https://orcid.org/0000-0002-7831-5905
Kwang-Won SeoCollege of Veterinary Medicine, Chungbuk National University, Cheongju 28644, Korea. vetskw16@chungbuk.ac.kr.ORCID https://orcid.org/0000-0003-1620-4916

Funding

Korea Disease Control and Prevention Agency 2022-ER2103-01Korea Disease Control and Prevention Agency 2024-ER2103-00Ministry of Food and Drug Safety 23194MFDS012
6 · The paper itself

Abstract

importanceThis study is essential for comprehending the zoonotic transmission, antimicrobial resistance, and genetic diversity of enteropathogenic

objectiveTo improve our understanding of EPEC, this study focused on analyzing and comparing the genomic characteristics of EPEC isolates from humans and companion animals in Korea.

methodsThe whole genome of 26 EPEC isolates from patients with diarrhea and 20 EPEC isolates from companion animals in Korea were sequenced using the Illumina HiSeq X (Illumina, USA) and Oxford Nanopore MinION (Oxford Nanopore Technologies, UK) platforms.

resultsMost isolates were atypical EPEC, and did not harbor the CONCLUSIONS AND RELEVANCE: Whole-genome sequencing enabled a more accurate analysis of the phylogenetic structure of EPEC and provided better insights into the understanding of EPEC epidemiology and pathogenicity.

Indexed as

Enteropathogenic Escherichia coliEscherichia coli InfectionsGenome, BacterialPetsAnimalsDiarrheaDogsHumansRepublic of KoreaVirulenceWhole Genome Sequencingcompanion animalEnteropathogenic Escherichia colihumanone healthwhole genome sequencing

Identifiers

PMID39749377
PMCPMC11799085

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.