Evidence map›Paper›PMID 39749347›Full record

ArticleFrontiers in immunology2024

Single-cell and spatiotemporal transcriptomic profiling of brain immune infiltration following Venezuelan equine encephalitis virus infection.

Margarita V Rangel, Aimy Sebastian, Nicole F Leon, Ashlee M Phillips, Bria M Gorman, Nicholas R Hum, Dina R Weilhammer

Abstract read
In one paragraph

Article in Frontiers in immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Advances in Single-Cell Sequencing for Infectious Diseases: Progress and Perspectives.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Margarita V RangelBiosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, United States.
Aimy SebastianBiosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, United States.
Nicole F LeonBiosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, United States.
Ashlee M PhillipsBiosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, United States.
Bria M GormanBiosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, United States.
Nicholas R HumBiosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, United States.
Dina R WeilhammerBiosciences and Biotechnology Division, Lawrence Livermore National Laboratory, Livermore, CA, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neurotropic alphaviruses such as Venezuelan equine encephalitis virus (VEEV) are critical human pathogens that continually expand to naïve populations and for which there are no licensed vaccines or therapeutics. VEEV is highly infectious via the aerosol route and is a recognized weaponizable biothreat that causes neurological disease in humans. The neuropathology of VEEV has been attributed to an inflammatory immune response in the brain yet the underlying mechanisms and specific immune cell populations involved are not fully elucidated. This study uses single-cell RNA sequencing to produce a comprehensive transcriptional profile of immune cells isolated from the brain over a time course of infection in a mouse model of VEEV. Analyses reveal differentially activated subpopulations of microglia, including a distinct type I interferon-expressing subpopulation. This is followed by the sequential infiltration of myeloid cells and cytotoxic lymphocytes, also comprising subpopulations with unique transcriptional signatures. We identify a subpopulation of myeloid cells that form a distinct localization pattern in the hippocampal region whereas lymphocytes are widely distributed, indicating differential modes of recruitment, including that to specific regions of the brain. Altogether, this study provides a high-resolution analysis of the immune response to VEEV in the brain and highlights potential avenues of investigation for therapeutics that target neuroinflammation in the brain.

Indexed as

BrainEncephalitis Virus, Venezuelan EquineEncephalomyelitis, Venezuelan EquineGene Expression ProfilingSingle-Cell AnalysisTranscriptomeAnimalsDisease Models, AnimalFemaleMiceMice, Inbred C57BLMicrogliaMyeloid Cellsencephalitisneuroimmunologysingle cell RNA sequencingspatial trancriptomicsVenezuelan equine encephalitis virus (VEEV)

Identifiers

PMID39749347
PMCPMC11693676

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.