Evidence map›Paper›PMID 39749323›Full record

ReviewFrontiers in immunology2024

Spatial transcriptomics in breast cancer: providing insight into tumor heterogeneity and promoting individualized therapy.

Junsha An, Yajie Lu, Yuxi Chen, Yuling Chen, Zhaokai Zhou, Jianping Chen, Cheng Peng, Ruizhen Huang, Fu Peng

Abstract readReview
In one paragraph

Review in Frontiers in immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
  2. Decoding the breast cancer microenvironment by spatial multi-omics: from architecture to clinical translation.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
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  10. Spatial omics for profiling the dynamic tumor microenvironment.Clinical & translational immunology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Junsha AnWest China School of Pharmacy, Sichuan University, Chengdu, China.
Yajie LuWest China School of Pharmacy, Sichuan University, Chengdu, China.
Yuxi ChenWest China School of Pharmacy, Sichuan University, Chengdu, China.
Yuling ChenWest China School of Pharmacy, Sichuan University, Chengdu, China.
Zhaokai ZhouDepartment of Clinical Medicine, Zhengzhou University, Zhengzhou, China.
Jianping ChenSchool of Chinese Medicine, The University of Hong Kong, Hong Kong, Hong Kong SAR, China.
Cheng PengState Key Laboratory of Southwestern Chinese Medicine Resources, Chengdu University of Traditional Chinese Medicine, Chengdu, China.
Ruizhen HuangCardiovascular Department, Hospital of Chengdu University of Traditional Chinese Medicine, Chengdu, China.
Fu PengWest China School of Pharmacy, Sichuan University, Chengdu, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A comprehensive understanding of tumor heterogeneity, tumor microenvironment and the mechanisms of drug resistance is fundamental to advancing breast cancer research. While single-cell RNA sequencing has resolved the issue of "temporal dynamic expression" of genes at the single-cell level, the lack of spatial information still prevents us from gaining a comprehensive understanding of breast cancer. The introduction and application of spatial transcriptomics addresses this limitation. As the annual technical method of 2020, spatial transcriptomics preserves the spatial location of tissues and resolves RNA-seq data to help localize and differentiate the active expression of functional genes within a specific tissue region, enabling the study of spatial location attributes of gene locations and cellular tissue environments. In the context of breast cancer, spatial transcriptomics can assist in the identification of novel breast cancer subtypes and spatially discriminative features that show promise for individualized precise treatment. This article summarized the key technical approaches, recent advances in spatial transcriptomics and its applications in breast cancer, and discusses the limitations of current spatial transcriptomics methods and the prospects for future development, with a view to advancing the application of this technology in clinical practice.

Indexed as

Breast NeoplasmsGene Expression ProfilingPrecision MedicineTranscriptomeTumor MicroenvironmentBiomarkers, TumorFemaleGene Expression Regulation, NeoplasticGenetic HeterogeneityHumansSingle-Cell AnalysisBiomarkers, Tumorbreast cancerheterogeneityindividualized precise treatmentspatial transcriptomicstumor microenvironment

Identifiers

PMID39749323
PMCPMC11693744

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.