Evidence map›Paper›PMID 39748295›Full record

ArticleBMC plant biology2025

Integration of transcriptome and metabolome reveals key regulatory defense pathways associated with high temperature stress in cucumber (Cucumis sativus L.).

Yong Yuan, Xiao Ma, Chuang Li, Xitong Zhong, Yuyan Li, Jianyu Zhao, Xiaolan Zhang, Zhaoyang Zhou

Abstract read
In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yong YuanSanya Institute of China Agricultural University, Sanya, 572025, China.
Xiao MaSanya Institute of China Agricultural University, Sanya, 572025, China.
Chuang LiSanya Institute of China Agricultural University, Sanya, 572025, China.
Xitong ZhongSanya Institute of China Agricultural University, Sanya, 572025, China.
Yuyan LiSanya Institute of China Agricultural University, Sanya, 572025, China.
Jianyu ZhaoSanya Institute of China Agricultural University, Sanya, 572025, China.
Xiaolan ZhangSanya Institute of China Agricultural University, Sanya, 572025, China.
Zhaoyang ZhouSanya Institute of China Agricultural University, Sanya, 572025, China. zyzhou@cau.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High temperature stress seriously affects the quality and yield of vegetable crops, especially cucumber (Cucumis sativus L.). However, the metabolic dynamics and gene regulatory network of cucumber in response to high temperature stress remain poorly studied. In this study, we identified a heat-tolerant cucumber Gy14 and a heat-sensitive cucumber 32X. RNA-seq analysis of Gy14 and 32X under high temperature stress showed that some differentially expressed genes (DEGs) were related to the biosynthesis of secondary metabolites. Metabolomic analysis revealed that there were more phenylpropanoids and their downstream derivatives in Gy14 compared to that in 32X under Re_2d condition (2 normal days recovery after heat). Integrated analysis of transcriptome and metabolome revealed that these upregulated genes played a pivotal role in flavonoid biosynthesis. Moreover, high temperature stress significantly induced the expression of the gibberellin (GA) biosynthesis genes and exogenous application of GA

Indexed as

Cucumis sativusGene Expression Regulation, PlantMetabolomeTranscriptomeGene Expression ProfilingGene Regulatory NetworksGibberellinsHeat-Shock ResponseHot TemperatureStress, PhysiologicalGibberellinsCucumberFlavonoidsHigh temperature stressMetabolomeTranscriptome

Identifiers

PMID39748295
PMCPMC11694469

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.