Evidence map›Paper›PMID 39747177›Full record

ArticleNature communications2025

Surface remodeling and inversion of cell-matrix interactions underlie community recognition and dispersal in Vibrio cholerae biofilms.

Alexis Moreau, Danh T Nguyen, Alexander J Hinbest, Anthony Zamora, Ranjuna Weerasekera, Katherine Matej, Xuening Zhou, Sandra Sanchez, Ignacio Rodriguez Brenes, Jung-Shen Benny Tai and 7 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Crystal structure ofProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Dissecting the physics of bacterial biofilms with agent-based simulations.Current opinion in solid state & materials science · 2025
    Article
  7. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Alexis MoreauDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT, USA.
Danh T NguyenDepartment of Mechanical Engineering, University of Wisconsin-Madison, Madison, WI, USA.
Alexander J HinbestDepartment of Molecular Biology and Biochemistry, Molecular Biophysics Program, Wesleyan University, Middletown, CT, USA.
Anthony ZamoraDepartment of Mathematics, University of California Irvine, Irvine, CA, USA.
Ranjuna WeerasekeraDepartment of Molecular Biology and Biochemistry, Molecular Biophysics Program, Wesleyan University, Middletown, CT, USA.ORCID 0000-0002-4740-9474
Katherine MatejDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT, USA.ORCID 0000-0003-0618-4691
Xuening ZhouInterdisciplinary Life Sciences Graduate Program, Center for Nonlinear Dynamics, The University of Texas at Austin, Austin, TX, USA.ORCID 0000-0001-9033-8301
Sandra SanchezDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA, USA.
Ignacio Rodriguez BrenesDepartment of Mathematics, University of California Irvine, Irvine, CA, USA.
Jung-Shen Benny TaiDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT, USA.
Carey D NadellDepartment of Biological Sciences, Dartmouth Colleague, Hanover, NH, USA.ORCID 0000-0003-1751-4895
Wai-Leung NgDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA, USA.
Vernita GordonInterdisciplinary Life Sciences Graduate Program, Center for Nonlinear Dynamics, The University of Texas at Austin, Austin, TX, USA.ORCID 0000-0002-5989-9378
Natalia L KomarovaDepartment of Mathematics, University of California San Diego, La Jolla, CA, USA.
Rich OlsonDepartment of Molecular Biology and Biochemistry, Molecular Biophysics Program, Wesleyan University, Middletown, CT, USA.ORCID 0000-0002-5432-206X
Ying LiDepartment of Mechanical Engineering, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0002-1487-3350
Jing YanDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT, USA. jing.yan@yale.edu.ORCID 0000-0003-2773-0348

Funding

Tufts IRACDAK12GM133314 · NIGMS · TUFTS UNIVERSITY BOSTON · PI CLAIRE L MOORE, Jamie Lynn Maguire · 2019 to 2026
$8.4M
SIGNALING MECHANISMS IN VIBRIO CHOLERAE PARALLEL QUORUM SENSING PATHWAYSR01AI121337 · NIAID · TUFTS UNIVERSITY BOSTON · PI NG, WAI-LEUNG · 2016 to 2025
$4.5M
Bacterial and Viral Predator-Prey Dynamics within Bacterial Biofilms at Cellular ResolutionR35GM151158 · NIGMS · DARTMOUTH COLLEGE · PI Carey Nadell · 2023 to 2026
$1.6M
Structural and functional studies of glycosyl hydrolases governing Vibrio biofilm dispersalR15GM152959 · NIGMS · WESLEYAN UNIVERSITY · PI OLSON, RICHARD A · 2023 to 2023
$471k
Damon Runyon Cancer Research Foundation (Cancer Research Fund of the Damon Runyon-Walter Winchell Foundation) DRG-2446-21National Science Foundation (NSF) 2017879National Science Foundation (NSF) 2150878National Science Foundation (NSF) 2205006National Science Foundation (NSF) 2313746NIAID NIH HHS R01 AI121337NIGMS NIH HHS K12 GM133314NIGMS NIH HHS R15 GM152959NIGMS NIH HHS R35 GM151158Simons Foundation 826672U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) 1R35GM151158-01U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) K12GM133314U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R15GM152959
6 · The paper itself

Abstract

Biofilms are ubiquitous surface-associated bacterial communities embedded in an extracellular matrix. It is commonly assumed that biofilm cells are glued together by the matrix; however, how the specific biochemistry of matrix components affects the cell-matrix interactions and how these interactions vary during biofilm growth remain unclear. Here, we investigate cell-matrix interactions in Vibrio cholerae, the causative agent of cholera. We combine genetics, microscopy, simulations, and biochemical analyses to show that V. cholerae cells are not attracted to the main matrix component (Vibrio polysaccharide, VPS), but can be attached to each other and to the VPS network through surface-associated VPS and crosslinks formed by the protein Bap1. Downregulation of VPS production and surface trimming by the polysaccharide lyase RbmB cause surface remodeling as biofilms age, shifting the nature of cell-matrix interactions from attractive to repulsive and facilitating cell dispersal as aggregated groups. Our results shed light on the dynamics of diverse cell-matrix interactions as drivers of biofilm development.

Indexed as

Bacterial ProteinsBiofilmsVibrio choleraeBacterial AdhesionExtracellular MatrixPolysaccharide-LyasesPolysaccharides, BacterialBacterial ProteinsPolysaccharide-LyasesPolysaccharides, Bacterial

Identifiers

PMID39747177
PMCPMC11695861

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.