Evidence map›Paper›PMID 39747099›Full record

ArticleNature communications2025

A higher order PUF complex is central to regulation of C. elegans germline stem cells.

Chen Qiu, Sarah L Crittenden, Brian H Carrick, Lucas B Dillard, Stephany J Costa Dos Santos, Venkata P Dandey, Robert C Dutcher, Elizabeth G Viverette, Robert N Wine, Jennifer Woodworth and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. RNA (New York, N.Y.) · 2025
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

Chen QiuEpigenetics and RNA Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC, USA.
Sarah L CrittendenDepartment of Biochemistry, University of Wisconsin, Madison, WI, USA.
Brian H CarrickDepartment of Biochemistry, University of Wisconsin, Madison, WI, USA.ORCID 0000-0003-0139-3582
Lucas B DillardGenome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC, USA.
Stephany J Costa Dos Santos *Department of Biochemistry, University of Wisconsin, Madison, WI, USA.
Venkata P Dandey *Genome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC, USA.
Robert C Dutcher *Epigenetics and RNA Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC, USA.
Elizabeth G Viverette *Genome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC, USA.
Robert N Wine *Epigenetics and RNA Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC, USA.
Jennifer Woodworth *Department of Biochemistry, University of Wisconsin, Madison, WI, USA.
Zachary T CampbellDepartment of Anesthesiology, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA.ORCID 0000-0002-3768-6996
Marvin WickensDepartment of Biochemistry, University of Wisconsin, Madison, WI, USA.ORCID 0000-0002-0593-5740
Mario J BorgniaGenome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC, USA.
Judith KimbleDepartment of Biochemistry, University of Wisconsin, Madison, WI, USA. jekimble@wisc.edu.ORCID 0000-0001-5622-2073
Traci M Tanaka HallEpigenetics and RNA Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC, USA. hall4@niehs.nih.gov.ORCID 0000-0001-6166-3009

Funding

Structural Studies Of Post-Transcriptional Gene RegulationZIAES050165 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI HALL, TRACI M · 2009 to 2025
$45.7M
NIEHS Cryo-EM Core FacilityZICES103326 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI BORGNIA, MARIO · 2017 to 2025
$17.0M
Crystallographic studies of macromolecular structuresZICES102645 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI PEDERSEN, LARS · 2018 to 2025
$12.6M
FUNCTION OF POLY(A) AND 3'UTRSR01GM050942 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI WICKENS, MARVIN P. · 1994 to 2020
$8.3M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Profiling Translation in Nociceptor PlasticityR01NS114018 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI Zachary Campbell · 2020 to 2026
$3.2M
Molecular regulation of germline developmentR01GM134119 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI KIMBLE, JUDITH · 2019 to 2022
$2.2M
Intramural NIH HHS ZIA ES050165Intramural NIH HHS ZIC ES102645Intramural NIH HHS ZIC ES103326NIGMS NIH HHS R01 GM050942NIGMS NIH HHS R01 GM134119NIH HHS P40 OD010440NINDS NIH HHS R01 NS114018NSF | Directorate for Education & Human Resources | Division of Graduate Education (DGE) DGE-1256259NSF | Directorate for Education & Human Resources | Division of Graduate Education (DGE) DGE-1747503U.S. Department of Health & Human Services | NIH | National Institute of Environmental Health Sciences (NIEHS) 1ZIC-ES103326U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GM134119U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01GM50942U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) R01NS114018
6 · The paper itself

Abstract

PUF RNA-binding proteins are broadly conserved stem cell regulators. Nematode PUF proteins maintain germline stem cells (GSCs) and, with key partner proteins, repress differentiation mRNAs, including gld-1. Here we report that PUF protein FBF-2 and its partner LST-1 form a ternary complex that represses gld-1 via a pair of adjacent FBF binding elements (FBEs) in its 3'UTR. One LST-1 molecule links two FBF-2 molecules via motifs in the LST-1 intrinsically-disordered region; the gld-1 FBE pair includes a well-established 'canonical' FBE and a newly-identified noncanonical FBE. Remarkably, this FBE pair drives both full RNA repression in GSCs and full RNA activation upon differentiation. Discoveries of the LST-1-FBF-2 ternary complex, the gld-1 adjacent FBEs, and their in vivo significance predict an expanded regulatory repertoire of different assemblies of PUF-partner-RNA higher order complexes in nematode GSCs. This also suggests analogous PUF controls may await discovery in other biological contexts and organisms.

Indexed as

3' Untranslated RegionsCaenorhabditis elegansCaenorhabditis elegans ProteinsGerm CellsRNA-Binding ProteinsStem CellsAnimalsCell DifferentiationProtein BindingRNA, Messenger3' Untranslated RegionsCaenorhabditis elegans Proteinsfem-3-binding protein, C elegansGLD-1 protein, C elegansLST-1 protein, C elegansRNA-Binding ProteinsRNA, Messenger

Identifiers

PMID39747099
PMCPMC11696143

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.