Evidence map›Paper›PMID 39747067›Full record

ArticleNature communications2025

Deciphering metabolic differentiation during Bacillus subtilis sporulation.

Juan D Tibocha-Bonilla, Jelani Lyda, Eammon Riley, Kit Pogliano, Karsten Zengler

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Effects ofMicroorganisms · 2026
    Article
  4. Article
  5. Article
  6. Differential survival and tolerance mechanisms ofApplied and environmental microbiology · 2026
    Article
  7. Early activation of bioenergetic metabolism powers bacterial spore germination.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Juan D Tibocha-Bonilla *Bioinformatics and Systems Biology Graduate Program, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, USA.
Jelani Lyda *School of Biological Sciences, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, USA.ORCID 0000-0001-6798-2844
Eammon RileySchool of Biological Sciences, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, USA.
Kit PoglianoSchool of Biological Sciences, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, USA. kpogliano@ucsd.edu.ORCID 0000-0002-7868-3345
Karsten ZenglerDepartment of Pediatrics, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, USA. kzengler@ucsd.edu.ORCID 0000-0002-8062-3296

Funding

Pathways in Biological Sciences Training ProgramT32GM133351 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Matthew Daugherty, Randolph Y. Hampton · 2020 to 2026
$9.9M
FORESPORE ENGULFMENT DURING B SUBTILIS SPORULATIONR01GM057045 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI POGLIANO, KIT J · 1998 to 2021
$6.1M
National Science Foundation (NSF) DMS-2325172National Science Foundation (NSF) EFMA-2223669NIGMS NIH HHS R01 GM057045NIGMS NIH HHS T32 GM133351U.S. Department of Energy (DOE) DE-AC36-08GO28308U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01-GM57045
6 · The paper itself

Abstract

The bacterium Bacillus subtilis undergoes asymmetric cell division during sporulation, producing a mother cell and a smaller forespore connected by the SpoIIQ-SpoIIIA (or Q-A) channel. The two cells differentiate metabolically, and the forespore becomes dependent on the mother cell for essential building blocks. Here, we investigate the metabolic interactions between mother cell and forespore using genome-scale metabolic and expression models as well as experiments. Our results indicate that nucleotides are synthesized in the mother cell and transported in the form of nucleoside di- or tri-phosphates to the forespore via the Q-A channel. However, if the Q-A channel is inactivated later in sporulation, then glycolytic enzymes can form an ATP and NADH shuttle, providing the forespore with energy and reducing power. Our integrated in silico and in vivo approach sheds light into the intricate metabolic interactions underlying cell differentiation in B. subtilis, and provides a foundation for future studies of metabolic differentiation.

Indexed as

Bacillus subtilisBacterial ProteinsSpores, BacterialAdenosine TriphosphateCell DivisionGene Expression Regulation, BacterialGlycolysisNADNucleotidesAdenosine TriphosphateBacterial ProteinsNADNucleotides

Identifiers

PMID39747067
PMCPMC11695771

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.