Evidence map›Paper›PMID 39746985›Full record

ArticleNature communications2025

Excitable Ras dynamics-based screens reveal RasGEFX is required for macropinocytosis and random cell migration.

Koji Iwamoto, Satomi Matsuoka, Masahiro Ueda

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Signaling and actin waves at a glance.Journal of cell science · 2025
    Review
  8. Ras-mediated dynamic and biphasic regulation of cell migration.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Koji IwamotoLaboratory of Single Molecule Biology, Graduate School of Science and Graduate School of Frontier Biosciences, Osaka University, 1-3 Yamadaoka, Suita, Osaka, 565-0871, Japan.ORCID 0000-0002-4819-4225
Satomi MatsuokaLaboratory of Single Molecule Biology, Graduate School of Science and Graduate School of Frontier Biosciences, Osaka University, 1-3 Yamadaoka, Suita, Osaka, 565-0871, Japan. ueda.masahiro.fbs@osaka-u.ac.jp.ORCID 0000-0002-4552-4460
Masahiro UedaLaboratory of Single Molecule Biology, Graduate School of Science and Graduate School of Frontier Biosciences, Osaka University, 1-3 Yamadaoka, Suita, Osaka, 565-0871, Japan. matsuoka.satomi.fbs@osaka-u.ac.jp.ORCID 0000-0002-9354-3404

Funding

Japan Agency for Medical Research and Development (AMED) JP20gm0910001MEXT | Japan Science and Technology Agency (JST) JPMJCR21E1MEXT | Japan Science and Technology Agency (JST) JPMJPR1879MEXT | Japan Society for the Promotion of Science (JSPS) 19H00982MEXT | Japan Society for the Promotion of Science (JSPS) 19H05798MEXT | Japan Society for the Promotion of Science (JSPS) 22KJ2207
6 · The paper itself

Abstract

Excitable systems of eukaryotic chemotaxis can generate asymmetric signals of Ras-GTP-enriched domains spontaneously to drive random cell migration without guidance cues. However, the molecules responsible for the spontaneous signal generation remain elusive. Here, we characterized RasGEFs encoded in Dictyostelium discoideum by live-cell imaging of the spatiotemporal dynamics of Ras-GTP and hierarchical clustering, finding that RasGEFX is primarily required for the spontaneous generation of Ras-GTP-enriched domains and is essential for random migration in combination with RasGEFB/M/U in starved cells, and they are dispensable for chemotaxis to chemoattractant cAMP. RasGEFX and RasGEFB that co-localize with Ras-GTP regulate the temporal periods and spatial sizes of the oscillatory Ras-GTP waves propagating along the membrane, respectively, and thus control the protrusions of motile cells differently, while RasGEFU and RasGEFM regulate adhesion and migration speed, respectively. Remarkably, RasGEFX is also important for Ras/PIP3-driven macropinocytosis in proliferating cells, but RasGEFB/M/U are not. These findings illustrate a specific and coordinated control of the cytoskeletal dynamics by multiple RasGEFs for spontaneous motility and macropinocytosis.

Indexed as

Cell MovementChemotaxisDictyosteliumPinocytosisras ProteinsCyclic AMPGuanosine TriphosphateProtozoan Proteinsras Guanine Nucleotide Exchange FactorsSignal TransductionCyclic AMPGuanosine TriphosphateProtozoan Proteinsras Guanine Nucleotide Exchange Factorsras Proteins

Identifiers

PMID39746985
PMCPMC11696275

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.