Evidence map›Paper›PMID 39746973›Full record

ArticleNature communications2025

Respiratory processes of early-evolved hyperthermophiles in sulfidic and low-oxygen geothermal microbial communities.

William P Inskeep, Zackary J Jay, Luke J McKay, Mensur Dlakić

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Effect of Ammonia onAntioxidants (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Microbial Evolution and Systematics: Archaea and Bacteria.Progress in molecular and subcellular biology · 2026
    Review
  4. Article
  5. Carbon Monoxide and Prokaryotic Energy Metabolism.International journal of molecular sciences · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

William P InskeepDepartment of Land Resources and Environmental Sciences, Montana State University, Bozeman, MT, USA. binskeep@montana.edu.ORCID 0000-0002-5203-817X
Zackary J Jay *Thermal Biology Institute, Montana State University, Bozeman, MT, USA.ORCID 0000-0003-3062-4933
Luke J McKay *Department of Land Resources and Environmental Sciences, Montana State University, Bozeman, MT, USA.ORCID 0000-0003-2942-1821
Mensur DlakićDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, MT, USA. mdlakic@montana.edu.ORCID 0000-0003-4315-1514

Funding

National Science Foundation (NSF) 1950770
6 · The paper itself

Abstract

Thermophilic microbial communities growing in low-oxygen environments often contain early-evolved archaea and bacteria, which hold clues regarding mechanisms of cellular respiration relevant to early life. Here, we conducted replicate metagenomic, metatranscriptomic, microscopic, and geochemical analyses on two hyperthermophilic (82-84 °C) filamentous microbial communities (Conch and Octopus Springs, Yellowstone National Park, WY) to understand the role of oxygen, sulfur, and arsenic in energy conservation and community composition. We report that hyperthermophiles within the Aquificota (Thermocrinis), Pyropristinus (Caldipriscus), and Thermoproteota (Pyrobaculum) are abundant in both communities; however, higher oxygen results in a greater diversity of aerobic heterotrophs. Metatranscriptomics revealed major shifts in respiratory pathways of keystone chemolithotrophs due to differences in oxygen versus sulfide. Specifically, early-evolved hyperthermophiles express high levels of high-affinity cytochrome bd and CydAA' oxidases in suboxic sulfidic environments and low-affinity heme Cu oxidases under microaerobic conditions. These energy-conservation mechanisms using cytochrome oxidases in high-temperature, low-oxygen habitats likely played a crucial role in the early evolution of microbial life.

Indexed as

ArsenicBacteriaCytochrome b GroupHot TemperatureMicrobiotaOxidoreductasesPyrobaculumSulfurAnaerobiosisElectron TransportEnergy MetabolismGeothermal EnergyHot SpringsPhylogenyArsenicCytochrome b GroupOxidoreductasesSulfur

Identifiers

PMID39746973
PMCPMC11696919

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.