Evidence map›Paper›PMID 39746969›Full record

ArticleNature communications2025

H3K56 acetylation regulates chromatin maturation following DNA replication.

Shoufu Duan, Ilana M Nodelman, Hui Zhou, Toshio Tsukiyama, Gregory D Bowman, Zhiguo Zhang

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Chromatin architecture sets origin licensing capacity.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Shoufu DuanInstitute for Cancer Genetics, Department of Pediatrics and Department of Genetics and Development, Columbia University Irving Medical Center, New York, NY, 10032, USA. duansf@im.ac.cn.ORCID 0000-0003-0416-374X
Ilana M NodelmanThomas C. Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, MD, 21218, USA.ORCID 0000-0003-1181-6913
Hui ZhouInstitute for Cancer Genetics, Department of Pediatrics and Department of Genetics and Development, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Toshio TsukiyamaBasic Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA, 98109, USA.
Gregory D BowmanThomas C. Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, MD, 21218, USA.ORCID 0000-0001-8025-4315
Zhiguo ZhangInstitute for Cancer Genetics, Department of Pediatrics and Department of Genetics and Development, Columbia University Irving Medical Center, New York, NY, 10032, USA. zz2401@cumc.columbia.edu.ORCID 0000-0002-9451-2685

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
Mechanisms of Epigenetic inheritanceR35GM118015 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Zhiguo Zhang · 2016 to 2026
$9.5M
Structural and Functional Characterization of the Chd1 Chromatin RemodelerR01GM084192 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI BOWMAN, GREGORY DEAN · 2008 to 2024
$6.3M
Molecular mechanisms and functions of global chromatin controlR35GM139429 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TOSHIO TSUKIYAMA · 2021 to 2026
$4.6M
NCI NIH HHS P30 CA013696NIGMS NIH HHS R01 GM084192NIGMS NIH HHS R35 GM118015NIGMS NIH HHS R35 GM139429U.S. Department of Health & Human Services | National Institutes of Health (NIH) R35GM118015
6 · The paper itself

Abstract

Following DNA replication, the newly reassembled chromatin is disorganized and must mature to its steady state to maintain both genome and epigenome integrity. However, the regulatory mechanisms governing this critical process remain poorly understood. Here, we show that histone H3K56 acetylation (H3K56ac), a mark on newly-synthesized H3, facilitates the remodeling of disorganized nucleosomes in nascent chromatin, and its removal at the subsequent G2/M phase of the cell cycle marks the completion of chromatin maturation. In vitro, H3K56ac enhances the activity of ISWI chromatin remodelers, including yeast ISW1 and its human equivalent SNF2h. In vivo, a deficiency of H3K56ac in nascent chromatin results in the formation of closely packed di-nucleosomes and/or tetra-nucleosomes. In contrast, abnormally high H3K56ac levels disrupt chromatin maturation, leading to genome instability. These findings establish a central role of H3K56ac in chromatin maturation and reveal a mechanism regulating this critical aspect of chromosome replication.

Indexed as

ChromatinDNA ReplicationHistonesNucleosomesSaccharomyces cerevisiaeAcetylationAdenosine TriphosphatasesChromatin Assembly and DisassemblyChromosomal Proteins, Non-HistoneGenomic InstabilityHumansSaccharomyces cerevisiae ProteinsTranscription FactorsAdenosine TriphosphatasesChromatinChromosomal Proteins, Non-HistoneHistonesISWI proteinNucleosomesSaccharomyces cerevisiae ProteinsSMARCA5 protein, humanTranscription Factors

Identifiers

PMID39746969
PMCPMC11697131

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.