Evidence map›Paper›PMID 39746933›Full record

ArticleNature communications2025

STAT1 regulates immune-mediated intestinal stem cell proliferation and epithelial regeneration.

Shuichiro Takashima, Roshan Sharma, Winston Chang, Marco Calafiore, Ya-Yuan Fu, Suze A Jansen, Takahiro Ito, Anastasiya Egorova, Jason Kuttiyara, Viktor Arnhold and 11 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. IFN-γ is a direct driver of crypt hyperplasia in celiac disease.The Journal of clinical investigation · 2025
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Shuichiro Takashima *Department of Medicine and Human Oncology & Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.ORCID 0000-0002-4200-5956
Roshan Sharma *New York Genome Center, New York, NY, 10013, USA.ORCID 0000-0001-9886-009X
Winston Chang *Department of Medicine and Human Oncology & Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Marco Calafiore *Department of Medicine and Human Oncology & Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Ya-Yuan Fu *Department of Medicine and Human Oncology & Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.ORCID 0000-0002-3894-0490
Suze A JansenDivision of Pediatrics, Regenerative Medicine Center, University Medical Center Utrecht, Utrecht University, 3508 AB, Utrecht, The Netherlands.ORCID 0000-0002-1225-9963
Takahiro ItoDepartment of Medicine and Human Oncology & Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.ORCID 0000-0003-1008-647X
Anastasiya EgorovaDepartment of Medicine and Human Oncology & Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Jason KuttiyaraDepartment of Medicine and Human Oncology & Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Viktor ArnholdDepartment of Medicine and Human Oncology & Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Jessica SharrockImmunology & Microbial Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Endi SantosaImmunology & Microbial Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Ojasvi ChaudharyComputational and Systems Biology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.ORCID 0000-0003-1434-2506
Heather GeigerNew York Genome Center, New York, NY, 10013, USA.
Hiromi IwasakiDepartment of Hematology, NHO Kyushu Medical Center, Fukuoka, Fukuoka, 810-8563, Japan.
Chen LiuDepartment of Pathology, Yale School of Medicine, New Haven, CT, 06520, USA.
Joseph SunImmunology & Microbial Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.ORCID 0000-0001-8062-9033
Nicolas RobineNew York Genome Center, New York, NY, 10013, USA.ORCID 0000-0001-5698-8183
Linas MazutisComputational and Systems Biology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.ORCID 0000-0002-5552-6427
Caroline A LindemansDivision of Pediatrics, Regenerative Medicine Center, University Medical Center Utrecht, Utrecht University, 3508 AB, Utrecht, The Netherlands.
Alan M HanashDepartment of Medicine and Human Oncology & Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA. hanasha@mskcc.org.ORCID 0000-0002-3273-3634

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Discriminating EGFR function in T cells and epithelium during immune-mediated tissue damageR01HL146338 · NHLBI · SLOAN-KETTERING INST CAN RESEARCH · PI Alan M Hanash · 2018 to 2026
$4.8M
Regulation of the intestinal stem cell compartment after hematopoietic transplantationR01HL125571 · NHLBI · SLOAN-KETTERING INST CAN RESEARCH · PI Alan M Hanash · 2015 to 2026
$4.4M
T cell invasion of the stem cell compartment during immune-mediated GI damageR01HL145631 · NHLBI · SLOAN-KETTERING INST CAN RESEARCH · PI HANASH, ALAN M · 2021 to 2024
$2.3M
NCI NIH HHS P30 CA008748NHLBI NIH HHS R01 HL125571NHLBI NIH HHS R01 HL145631NHLBI NIH HHS R01 HL146338U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) P30-CA008748U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01-HL125571U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01-HL145631U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01-HL146338
6 · The paper itself

Abstract

The role of the immune system in regulating tissue stem cells remains poorly understood, as does the relationship between immune-mediated tissue damage and regeneration. Graft vs. host disease (GVHD) occurring after allogeneic bone marrow transplantation (allo-BMT) involves immune-mediated damage to the intestinal epithelium and its stem cell compartment. To assess impacts of T-cell-driven injury on distinct epithelial constituents, we have performed single cell RNA sequencing on intestinal crypts following experimental BMT. Intestinal stem cells (ISCs) from GVHD mice have exhibited global transcriptomic changes associated with a substantial Interferon-γ response and upregulation of STAT1. To determine its role in crypt function, STAT1 has been deleted within murine intestinal epithelium. Following allo-BMT, STAT1 deficiency has resulted in reduced epithelial proliferation and impaired ISC recovery. Similarly, epithelial Interferon-γ receptor deletion has also attenuated proliferation and ISC recovery post-transplant. Investigating the mechanistic basis underlying this epithelial response, ISC STAT1 expression in GVHD has been found to correlate with upregulation of ISC c-Myc. Furthermore, activated T cells have stimulated Interferon-γ-dependent epithelial regeneration in co-cultured organoids, and Interferon-γ has directly induced STAT1-dependent c-Myc expression and ISC proliferation. These findings illustrate immunologic regulation of a core tissue stem cell program after damage and support a role for Interferon-γ as a direct contributor to epithelial regeneration.

Indexed as

Bone Marrow TransplantationCell ProliferationGraft vs Host DiseaseInterferon-gammaIntestinal MucosaMice, Inbred C57BLRegenerationSTAT1 Transcription FactorStem CellsAnimalsFemaleInterferon gamma ReceptorMiceMice, KnockoutOrganoidsProto-Oncogene Proteins c-mycInterferon-gammaInterferon gamma ReceptorMyc protein, mouseProto-Oncogene Proteins c-mycStat1 protein, mouseSTAT1 Transcription Factor

Identifiers

PMID39746933
PMCPMC11697299

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.