Evidence map›Paper›PMID 39746677›Full record

ArticleClinical genetics2025

Novel Phenotypes and Genotype-Phenotype Correlations in a Large Clinical Cohort of Patients With Kleefstra Syndrome.

Zoë J Frazier, Seyda Kilic, Hailey Osika, Alisa Mo, Meg Quinn, Sonia Ballal, Tamar Katz, A Eliot Shearer, Max A Horlbeck, Lynn S Pais and 6 more

Abstract read
In one paragraph

Article in Clinical genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Zoë J FrazierRosamund Stone Zander Translational Neuroscience Center, Department of Neurology, Boston Children's Hospital, Boston, Massachusetts, USA.
Seyda KilicSchool of Arts and Sciences, Tufts University, Medford, Massachusetts, USA.ORCID 0000-0002-5455-4258
Hailey OsikaRosamund Stone Zander Translational Neuroscience Center, Department of Neurology, Boston Children's Hospital, Boston, Massachusetts, USA.
Alisa MoDepartment of Neurology, Boston Children's Hospital, Boston, Massachusetts, USA.
Meg QuinnRosamund Stone Zander Translational Neuroscience Center, Department of Neurology, Boston Children's Hospital, Boston, Massachusetts, USA.
Sonia BallalDivision of Gastroenterology, Hepatology and Nutrition, Boston Children's Hospital, Boston, Massachusetts, USA.
Tamar KatzDepartment of Psychiatry and Behavioral Sciences, Boston Children's Hospital, Boston, Massachusetts, USA.
A Eliot ShearerDepartment of Otolaryngology & Communication Enhancement, Boston Children's Hospital, Boston, Massachusetts, USA.
Max A HorlbeckDivision of Genetics and Genomics, Boston Children's Hospital, Boston, Massachusetts, USA.ORCID 0000-0002-3875-871X
Lynn S PaisDivision of Genetics and Genomics, Boston Children's Hospital, Boston, Massachusetts, USA.
Kira A DiesRosamund Stone Zander Translational Neuroscience Center, Department of Neurology, Boston Children's Hospital, Boston, Massachusetts, USA.
Anne O'Donnell-LuriaDivision of Genetics and Genomics, Boston Children's Hospital, Boston, Massachusetts, USA.
Joe KossowskyDepartment of Anesthesiology, Critical Care and Pain Medicine, Boston Children's Hospital, Boston, Massachusetts, USA.
Jonathan O LiptonRosamund Stone Zander Translational Neuroscience Center, Department of Neurology, Boston Children's Hospital, Boston, Massachusetts, USA.
Tjitske KleefstraDepartment of Clinical Genetics, Erasmus University Rotterdam, Rotterdam, the Netherlands.
Siddharth SrivastavaRosamund Stone Zander Translational Neuroscience Center, Department of Neurology, Boston Children's Hospital, Boston, Massachusetts, USA.

Funding

TRAINING GRANT IN GENETICST32GM007748 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI Anne O'Donnell-Luria, Louise Wilkins-Haug · 1985 to 2026
$12.0M
Genetic Analysis and Manipulation Core (GAEC)P50HD105351 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI Hisashi Umemori · 2021 to 2026
$9.4M
The Child Heath Research CenterK12HD052896 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI Wendy K Chung · 2007 to 2026
$7.9M
Mechanisms of Circadian and Synaptic Dysfunction After Repetitive Mild TBIRF1NS126547 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI LIPTON, JONATHAN OREN, WHALEN, MICHAEL J · 2022 to 2022
$2.4M
Investigating Circadian Mechanisms of Cellular Resilience: Rhythmic Condensates, Disorder, and StressR01HL151368 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI LIPTON, JONATHAN OREN · 2020 to 2024
$2.1M
Investigating the Genetic Landscape of Cerebral PalsyK23NS119666 · NINDS · BOSTON CHILDREN'S HOSPITAL · PI SRIVASTAVA, SIDDHARTH · 2021 to 2025
$1.1M
NHLBI NIH HHS R01 HL151368NICHD NIH HHS K12 HD052896NICHD NIH HHS P50 HD105351NIGMS NIH HHS T32 GM007748NIH HHS 1RF1NS126547NIH HHS 5R01HL151368NIH HHS K12HD052896NIH HHS P50 HD105351NIH HHS T32GM007748NINDS NIH HHS K23 NS119666NINDS NIH HHS K23NS119666NINDS NIH HHS RF1 NS126547
6 · The paper itself

Abstract

Kleefstra syndrome (KLEFS) is a genetic neurodevelopmental disorder caused by haploinsufficiency of EHMT1. The full spectrum of clinical features and genotype-phenotype correlations is currently not fully understood. We performed a retrospective chart review of patients with KLEFS evaluated at the Boston Children's Hospital Kleefstra Clinic. There were 65 individuals (40 females, 25 males, mean age 9.3 years). 17% had large 9q34 deletions (≥ 1 Mb), 29% had small 9q34 deletions (< 1 Mb), and 54% had sequence variants. Global developmental delay (GDD) or intellectual disability (ID) was present in 77%. Behavioral disorders, such as autism spectrum disorder (38%), were common. Epilepsy affected 15%. Systemic health issues included structural cardiac defects (40%), hearing loss (32%), and constipation (31%). Novel features including subgroups with significant motor impairment (24%) and refractory epilepsy (9%), as well as small numbers with opsoclonus-like eye movements (n = 2), thrombocytopenia (n = 2), progressive cerebral atrophy (n = 1), and adrenal carcinoma (n = 1). 9q34 deletion subgroups had higher rates of GDD/ID (p = 0.037), significant motor impairment (p = 0.01), epilepsy (p = 0.004), and cortical visual impairment (p = 0.003) compared to the subgroup with sequence variants. This information may be used to improve clinical care as well as inform research and future therapeutic initiatives.

Indexed as

Chromosome DeletionCraniofacial AbnormalitiesHeart Defects, CongenitalIntellectual DisabilityAdolescentAdultChildChild, PreschoolChromosomes, Human, Pair 9Cohort StudiesFemaleGenotypeHistone-Lysine N-MethyltransferaseHumansInfantMaleEHMT1 protein, humanHistone-Lysine N-Methyltransferase9q34.3 deletionEHMT1genotype–phenotype correlationKleefstra syndromeneurodevelopment

Identifiers

PMID39746677
PMCPMC12050201

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.