Evidence map›Paper›PMID 39746152›Full record

ArticleBiomacromolecules2025

Revealing the Solution Conformation and Hydration Structure of Type I Tropocollagen Using X-ray Scattering and Molecular Dynamics Simulation.

Ying-Jen Shiu, Bradley W Mansel, Kuei-Fen Liao, Ting-Wei Hsu, Je-Wei Chang, Orion Shih, Yi-Qi Yeh, Johannes Allwang, U-Ser Jeng

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Article in Biomacromolecules, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ying-Jen ShiuNational Synchrotron Radiation Research Center, Hsinchu 300092, Taiwan.
Bradley W ManselNational Synchrotron Radiation Research Center, Hsinchu 300092, Taiwan.
Kuei-Fen LiaoNational Synchrotron Radiation Research Center, Hsinchu 300092, Taiwan.
Ting-Wei HsuNational Synchrotron Radiation Research Center, Hsinchu 300092, Taiwan.
Je-Wei ChangNational Synchrotron Radiation Research Center, Hsinchu 300092, Taiwan.
Orion ShihNational Synchrotron Radiation Research Center, Hsinchu 300092, Taiwan.ORCID 0000-0002-0610-6856
Yi-Qi YehNational Synchrotron Radiation Research Center, Hsinchu 300092, Taiwan.ORCID 0000-0002-2387-3600
Johannes AllwangNational Synchrotron Radiation Research Center, Hsinchu 300092, Taiwan.ORCID 0009-0004-5279-476X
U-Ser JengNational Synchrotron Radiation Research Center, Hsinchu 300092, Taiwan.ORCID 0000-0002-2247-5061

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hydration plays a crucial role in regulating the dispersion behavior of biomolecules in water, particularly in how pH-sensitive hydration water network forms around proteins. This study explores the conformation and hydration structure of Type-I tropocollagen using small- and wide-angle X-ray scattering (SWAXS) and molecular dynamics (MD) simulations. The results reveal that tropocollagen exhibits a significant softening conformation in solution, transitioning from its rod-like structure in tissues to a worm-like conformation, characterized by a reduced radius of gyration of 50 nm and a persistent length of 34 nm. The SWAXS-supported MD calculations further establish a hydration water network characterized by a 2.8 Å free-water exclusion zone where water molecules are largely hydrogen-bonded to the densely distributed polar groups on the tropocollagen surfaces. These first-layer water molecules are bridged by outer water molecules extending up to 4 Å from the protein surfaces, forming a major hydration shell that encapsulates the protein.

Indexed as

Molecular Dynamics SimulationTropocollagenWaterHydrogen BondingProtein ConformationScattering, Small AngleSolutionsX-Ray DiffractionSolutionsTropocollagenWater

Identifiers

PMID39746152
PMCPMC11734691

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.