Evidence map›Paper›PMID 39746096›Full record

ArticlePloS one2025

A generalised catalytic model to assess changes in risk for multiple reinfections with SARS-CoV-2.

Belinda Lombard, Cheryl Cohen, Anne von Gottberg, Jonathan Dushoff, Juliet R C Pulliam, Cari van Schalkwyk

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Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Belinda LombardSouth African DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa.ORCID 0000-0001-6116-0479
Cheryl CohenCentre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases, a division of the National Health Laboratory Health Laboratory Service, Johannesburg, South Africa.
Anne von GottbergCentre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases, a division of the National Health Laboratory Health Laboratory Service, Johannesburg, South Africa.ORCID 0000-0002-0243-7455
Jonathan DushoffSouth African DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa.ORCID 0000-0003-0506-4794
Juliet R C PulliamSouth African DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa.ORCID 0000-0003-3314-8223
Cari van SchalkwykSouth African DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa.

Funding

Wellcome Trust
6 · The paper itself

Abstract

backgroundMonitoring trends in multiple infections with SARS-CoV-2, following several pandemic waves, provides insight into the biological characteristics of new variants, but also necessitates methods to understand the risk of multiple reinfections.

objectivesWe generalised a catalytic model designed to detect increases in the risk of SARS-CoV-2 reinfection, to assess the population-level risk of multiple reinfections.

methodsThe catalytic model assumes the risk of reinfection is proportional to observed infections and uses a Bayesian approach to fit model parameters to the number of nth infections among individuals that occur at least 90 days after a previous infection. Using a posterior draw from the fitted model parameters, a 95% projection interval of daily nth infections is calculated under the assumption of a constant nth infection hazard coefficient. An additional model parameter was incorporated for the increased reinfection risk detected during the Omicron wave. The generalised model's performance was then assessed using simulation-based validation. KEY

findingsNo additional increase in the risk of third infection was detected after the increase detected during the Omicron wave. Using simulation-based validation, we show that the model can successfully detect increases in the risk of third infections under different scenarios. LIMITATIONS: Even though the generalised model is intended to detect the risk of nth infections, it is validated specifically for third infections, with its applicability for four or more infections being unconfirmed. Furthermore, the method's sensitivity to low counts of nth infections, limits application in settings with small epidemics, limited testing coverage or early in an outbreak.

conclusionsThe catalytic model was successfully adapted to detect increases in the risk of nth infections, enhancing our capacity to identify future changes in the risk of nth infections by SARS-CoV-2 or other similar pathogens.

Indexed as

Bayes TheoremCOVID-19ReinfectionSARS-CoV-2Computer SimulationHumansPandemicsRisk Assessment

Identifiers

PMID39746096
PMCPMC11694959

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.