Evidence map›Paper›PMID 39745634›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2025

Tracking Somatic Mutations for Lineage Reconstruction.

Yaara Neumeier, Ofir Raz, Liming Tao, Zipora Marx, Ehud Shapiro

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yaara NeumeierDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.
Ofir RazDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.
Liming TaoDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.
Zipora MarxDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.
Ehud ShapiroDepartment of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel. ehud.shapiro@weizmann.ac.il.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The human genome is composed of distinct genomic regions that are susceptible to various types of somatic mutations. Among these, Short Tandem Repeats (STRs) stand out as the most mutable genetic elements. STRs are short repetitive polymorphic sequences, predominantly situated within noncoding sectors of the genome. The intrinsic repetition characterizing these sequences makes them highly mutable in vivo. Consequently, this characteristic provides the chance to unravel the natural developmental history of human viable cells retrospectively. However, STRs also introduce stutter noise in vitro amplification, which makes their analysis challenging. Here we describe our integrated biochemical-computational platform for single-cell lineage analysis. It consists of a pipeline whose inputs are single cells and whose output is a lineage tree of input cells.

Indexed as

Cell LineageMutationSingle-Cell AnalysisComputational BiologyGenome, HumanHumansMicrosatellite RepeatsSoftwareCancerHumanLineage treeRetrospectiveShort tandem repeatsSingle cell

Identifiers

PMID39745634

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.