Evidence map›Paper›PMID 39744838›Full record

ArticleArteriosclerosis, thrombosis, and vascular biology2025

Single-Cell Transcriptomics Identifies Selective Lineage-Specific Regulation of Genes in Aortic Smooth Muscle Cells in Mice.

Shalabh Shukla, Sayantan Jana, Nicole Sanford, Chloe Y Lee, Li Liu, Paul Cheng, Thomas Quertermous, David A Dichek

Abstract read
In one paragraph

Article in Arteriosclerosis, thrombosis, and vascular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Functional analysis ofFrontiers in cardiovascular medicine · 2025
    Article
  6. Transforming growth factor-beta (TGF-β) in the pathogenesis of hereditary thoracic aneurysm disorders.Cardiovascular pathology : the official journal of the Society for Cardiovascular Pathology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Shalabh Shukla *Division of Cardiology, Department of Medicine, University of Washington, Seattle (S.S., S.J., N.S., C.Y.L., L.L., D.A.D.).ORCID 0009-0000-5308-5472
Sayantan Jana *Division of Cardiology, Department of Medicine, University of Washington, Seattle (S.S., S.J., N.S., C.Y.L., L.L., D.A.D.).ORCID 0000-0003-2855-1560
Nicole SanfordDivision of Cardiology, Department of Medicine, University of Washington, Seattle (S.S., S.J., N.S., C.Y.L., L.L., D.A.D.).
Chloe Y LeeDivision of Cardiology, Department of Medicine, University of Washington, Seattle (S.S., S.J., N.S., C.Y.L., L.L., D.A.D.).ORCID 0000-0002-5880-6635
Li LiuDivision of Cardiology, Department of Medicine, University of Washington, Seattle (S.S., S.J., N.S., C.Y.L., L.L., D.A.D.).
Paul ChengDivision of Cardiovascular Medicine, Department of Medicine, Stanford University, CA (P.C., T.Q.).ORCID 0000-0003-3429-2702
Thomas QuertermousDivision of Cardiovascular Medicine, Department of Medicine, Stanford University, CA (P.C., T.Q.).ORCID 0000-0002-7645-9067
David A DichekDivision of Cardiology, Department of Medicine, University of Washington, Seattle (S.S., S.J., N.S., C.Y.L., L.L., D.A.D.).ORCID 0000-0002-5224-2736

Funding

Stanford Center for Connecting DNA Variants to Function and PhenotypeUM1HG011972 · NHGRI · STANFORD UNIVERSITY · PI JESSE M ENGREITZ, THOMAS QUERTERMOUS · 2021 to 2026
$10.5M
Causal variant association mechanisms in TCF21 binding coronary disease lociR01HL134817 · NHLBI · STANFORD UNIVERSITY · PI THOMAS QUERTERMOUS · 2017 to 2026
$6.2M
The SMAD3 signaling network in coronary artery disease riskR01HL139478 · NHLBI · STANFORD UNIVERSITY · PI THOMAS QUERTERMOUS · 2018 to 2026
$3.7M
PDGFD regulates a transcriptional network to modulate smooth muscle cell transition and coronary artery disease riskR01HL156846 · NHLBI · STANFORD UNIVERSITY · PI QUERTERMOUS, THOMAS · 2021 to 2024
$2.7M
Identifying tobacco-genetic interactions through study of the aryl hydrocarbon receptor pathway.R01HL151535 · NHLBI · STANFORD UNIVERSITY · PI QUERTERMOUS, THOMAS · 2021 to 2024
$2.7M
Molecular mechanisms of vascular calcification and their connection to coronary disease riskR01HL158525 · NHLBI · STANFORD UNIVERSITY · PI QUERTERMOUS, THOMAS · 2022 to 2025
$2.4M
Gene regulatory networks controlling smooth muscle phenotype and vasculardisease riskR01HL171045 · NHLBI · STANFORD UNIVERSITY · PI THOMAS QUERTERMOUS · 2024 to 2026
$2.1M
Roles of SMC TGF-beta Signaling in Aortic Health and Aneurysm FormationR01HL116612 · NHLBI · UNIVERSITY OF WASHINGTON · PI DICHEK, DAVID A · 2013 to 2016
$1.5M
NHGRI NIH HHS UM1 HG011972NHLBI NIH HHS R01 HL116612NHLBI NIH HHS R01 HL134817NHLBI NIH HHS R01 HL139478NHLBI NIH HHS R01 HL151535NHLBI NIH HHS R01 HL156846NHLBI NIH HHS R01 HL158525NHLBI NIH HHS R01 HL171045
6 · The paper itself

Abstract

backgroundSmooth muscle cells (SMCs) of the proximal thoracic aorta are derived from second heart field (SHF) and cardiac neural crest (CNC) lineages. Recent studies, both in vitro and in vivo, have implied relevance of lineage-specific SMC functions in the pathophysiology of thoracic aortic diseases; however, whether 2 lineage-derived SMCs have any predisposed transcriptional differences in the control aorta remains unexplored.

methodsSingle-cell RNA sequencing and single-nucleus assay for transposase-accessible chromatin sequencing were performed on isolated cells from the aortic root and ascending aortas of 14-week-old SHF-traced (

resultsLineage stratification of SMCs in the proximal thoracic aorta was identified using antibody-based immunofluorescence staining. Single-cell RNA sequencing recognized 12 consistently upregulated DEGs (

conclusionsThe present study recognizes the presence of limited but distinct transcriptomic differences between CNC-derived and SHF-derived SMCs in the control proximal thoracic aorta.

Indexed as

Aorta, ThoracicCell LineageMuscle, Smooth, VascularMyocytes, Smooth MuscleSingle-Cell AnalysisTranscriptomeAnimalsGene Expression ProfilingMaleMiceNeural CrestRNA-Seqaortachromatingene expression profilingneural crest

Identifiers

PMID39744838
PMCPMC11875902

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.