Evidence map›Paper›PMID 39743586›Full record

ArticleNature2025

Centrophilic retrotransposon integration via CENH3 chromatin in Arabidopsis.

Sayuri Tsukahara, Alexandros Bousios, Estela Perez-Roman, Sota Yamaguchi, Basile Leduque, Aimi Nakano, Matthew Naish, Akihisa Osakabe, Atsushi Toyoda, Hidetaka Ito and 13 more

Abstract read
In one paragraph

Article in Nature, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

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  15. Chromosome-level genome assembly of the Gerbera (Gerbera hybrida) using HiFi long-read and Hi-C technologies.DNA research : an international journal for rapid publication of reports on genes and genomes · 2026
    Article
  16. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Sayuri TsukaharaDepartment of Biological Sciences, The University of Tokyo, Tokyo, Japan. stsukaha@g.ecc.u-tokyo.ac.jp.ORCID 0009-0001-0640-2583
Alexandros BousiosSchool of Life Sciences, University of Sussex, Brighton, UK. ab35@sussex.ac.uk.ORCID 0000-0002-8005-6949
Estela Perez-RomanSchool of Life Sciences, University of Sussex, Brighton, UK.
Sota YamaguchiDepartment of Biological Sciences, The University of Tokyo, Tokyo, Japan.ORCID 0009-0006-0780-6279
Basile LeduqueInstitute of Plant Sciences Paris-Saclay (IPS2), Centre National de la Recherche Scientifique, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Université Evry, Université Paris-Saclay, Gif sur Yvette, France.ORCID 0000-0002-9450-3586
Aimi NakanoDepartment of Biological Sciences, The University of Tokyo, Tokyo, Japan.
Matthew NaishDepartment of Plant Sciences, University of Cambridge, Cambridge, UK.ORCID 0000-0002-8977-1295
Akihisa OsakabeDepartment of Biological Sciences, The University of Tokyo, Tokyo, Japan.ORCID 0000-0002-2526-3398
Atsushi ToyodaCenter for Genetic Resource Information, National Institute of Genetics, Mishima, Japan.ORCID 0000-0002-0728-7548
Hidetaka ItoFaculty of Science, Hokkaido University, Sapporo, Japan.
Alejandro EderaInstitute of Plant Sciences Paris-Saclay (IPS2), Centre National de la Recherche Scientifique, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Université Evry, Université Paris-Saclay, Gif sur Yvette, France.ORCID 0000-0001-9864-3159
Sayaka TominagaDepartment of Biological Sciences, The University of Tokyo, Tokyo, Japan.
JuliarniDepartment of Biological Sciences, The University of Tokyo, Tokyo, Japan.
Kae KatoDepartment of Integrated Genetics, National Institute of Genetics, Mishima, Japan.
Shoko OdaDepartment of Biological Sciences, The University of Tokyo, Tokyo, Japan.
Soichi InagakiDepartment of Biological Sciences, The University of Tokyo, Tokyo, Japan.ORCID 0000-0003-4090-826X
Zdravko LorkovićGregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna BioCenter (VBC), Vienna, Austria.
Kiyotaka NagakiInstitute of Plant Science and Resources, Okayama University, Kurashiki, Japan.ORCID 0000-0001-9267-4106
Frédéric BergerGregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna BioCenter (VBC), Vienna, Austria.ORCID 0000-0002-3609-8260
Akira KawabeFaculty of Life Sciences, Kyoto Sangyo University, Kyoto, Japan.ORCID 0000-0001-5770-412X
Leandro QuadranaInstitute of Plant Sciences Paris-Saclay (IPS2), Centre National de la Recherche Scientifique, Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, Université Evry, Université Paris-Saclay, Gif sur Yvette, France.
Ian HendersonDepartment of Plant Sciences, University of Cambridge, Cambridge, UK.ORCID 0000-0001-5066-1489
Tetsuji KakutaniDepartment of Biological Sciences, The University of Tokyo, Tokyo, Japan. tkak@bs.s.u-tokyo.ac.jp.ORCID 0000-0002-6137-4474

Funding

Human Frontier Science ProgramRoyal Society awards
6 · The paper itself

Abstract

In organisms ranging from vertebrates to plants, major components of centromeres are rapidly evolving repeat sequences, such as tandem repeats (TRs) and transposable elements (TEs), which harbour centromere-specific histone H3 (CENH3)

Indexed as

ArabidopsisArabidopsis ProteinsCentromereChromatinHistonesRetroelementsDNA Transposable ElementsEvolution, MolecularTandem Repeat SequencesTerminal Repeat SequencesArabidopsis ProteinsChromatinDNA Transposable ElementsHistonesRetroelements

Identifiers

PMID39743586
PMCPMC11735389

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.