Evidence map›Paper›PMID 39742473›Full record

ArticleScience advances2025

Spatial transcriptomics in bone mechanomics: Exploring the mechanoregulation of fracture healing in the era of spatial omics.

Neashan Mathavan, Amit Singh, Francisco Correia Marques, Denise Günther, Gisela A Kuhn, Esther Wehrle, Ralph Müller

Abstract read
In one paragraph

Article in Science advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

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  13. Spatial transcriptomics for gene discovery identifiesbioRxiv : the preprint server for biology · 2026
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  17. Advances in Spatial Transcriptomics in Bone.Current osteoporosis reports · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Neashan MathavanInstitute for Biomechanics, ETH Zürich, Zürich, Switzerland.ORCID 0000-0002-5900-1396
Amit SinghInstitute for Biomechanics, ETH Zürich, Zürich, Switzerland.
Francisco Correia MarquesInstitute for Biomechanics, ETH Zürich, Zürich, Switzerland.ORCID 0000-0002-1651-0457
Denise GüntherInstitute for Biomechanics, ETH Zürich, Zürich, Switzerland.ORCID 0009-0003-0206-7188
Gisela A KuhnInstitute for Biomechanics, ETH Zürich, Zürich, Switzerland.
Esther WehrleInstitute for Biomechanics, ETH Zürich, Zürich, Switzerland.ORCID 0000-0003-2723-7342
Ralph MüllerInstitute for Biomechanics, ETH Zürich, Zürich, Switzerland.ORCID 0000-0002-5811-7725

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In recent decades, the field of bone mechanobiology has sought experimental techniques to unravel the molecular mechanisms governing the phenomenon of mechanically regulated fracture healing. Each cell within a fracture site resides within different local microenvironments characterized by different levels of mechanical strain; thus, preserving the spatial location of each cell is critical in relating cellular responses to mechanical stimuli. Our spatial transcriptomics-based "mechanomics" platform facilitates spatially resolved analysis of the molecular profiles of cells with respect to their local in vivo mechanical environment by integrating time-lapsed in vivo micro-computed tomography, spatial transcriptomics, and micro-finite element analysis. We investigate the transcriptomic responses of cells as a function of the local strain magnitude by identifying the differential expression of genes in regions of high and low strain within a fracture site. Our platform thus has the potential to address fundamental open questions within the field and to discover mechano-responsive targets to enhance fracture healing.

Indexed as

Fracture HealingTranscriptomeAnimalsBiomechanical PhenomenaBone and BonesFinite Element AnalysisFractures, BoneGene Expression ProfilingHumansMechanotransduction, CellularMiceStress, MechanicalX-Ray Microtomography

Identifiers

PMID39742473
PMCPMC11694773

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.