Evidence map›Paper›PMID 39742304›Full record

ArticleiMeta2024

Comprehensive lung microbial gene and genome catalogs assist the mechanism survey of

Jingquan Li, Fei Huang, Yunyan Zhou, Tao Huang, Xinkai Tong, Mingpeng Zhang, Jiaqi Chen, Zhou Zhang, Huipeng Du, Zifeng Liu and 5 more

Abstract read
In one paragraph

Article in iMeta, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Jingquan LiNational Key Laboratory of Pig Genetic Improvement and Germplasm Innovation Jiangxi Agricultural University Nanchang China.
Fei HuangNational Key Laboratory of Pig Genetic Improvement and Germplasm Innovation Jiangxi Agricultural University Nanchang China.
Yunyan ZhouNational Key Laboratory of Pig Genetic Improvement and Germplasm Innovation Jiangxi Agricultural University Nanchang China.
Tao HuangNational Key Laboratory of Pig Genetic Improvement and Germplasm Innovation Jiangxi Agricultural University Nanchang China.
Xinkai TongNational Key Laboratory of Pig Genetic Improvement and Germplasm Innovation Jiangxi Agricultural University Nanchang China.
Mingpeng ZhangNational Key Laboratory of Pig Genetic Improvement and Germplasm Innovation Jiangxi Agricultural University Nanchang China.
Jiaqi ChenNational Key Laboratory of Pig Genetic Improvement and Germplasm Innovation Jiangxi Agricultural University Nanchang China.
Zhou ZhangNational Key Laboratory of Pig Genetic Improvement and Germplasm Innovation Jiangxi Agricultural University Nanchang China.
Huipeng DuNational Key Laboratory of Pig Genetic Improvement and Germplasm Innovation Jiangxi Agricultural University Nanchang China.
Zifeng LiuNational Key Laboratory of Pig Genetic Improvement and Germplasm Innovation Jiangxi Agricultural University Nanchang China.
Meng ZhouNational Key Laboratory of Pig Genetic Improvement and Germplasm Innovation Jiangxi Agricultural University Nanchang China.
Yiwen XiahouNational Key Laboratory of Pig Genetic Improvement and Germplasm Innovation Jiangxi Agricultural University Nanchang China.
Huashui AiNational Key Laboratory of Pig Genetic Improvement and Germplasm Innovation Jiangxi Agricultural University Nanchang China.
Congying ChenNational Key Laboratory of Pig Genetic Improvement and Germplasm Innovation Jiangxi Agricultural University Nanchang China.
Lusheng HuangNational Key Laboratory of Pig Genetic Improvement and Germplasm Innovation Jiangxi Agricultural University Nanchang China.ORCID 0000-0002-6940-667X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding the community structure of the lower respiratory tract microbiome is crucial for elucidating its roles in respiratory tract diseases. However, there are few studies about this topic due to the difficulty in obtaining microbial samples from both healthy and disease individuals. Here, using 744 high-depth metagenomic sequencing data of lower respiratory tract microbial samples from 675 well-phenotyped pigs, we constructed a lung microbial gene catalog containing the largest scale of 10,031,593 nonredundant genes to date, 44.8% of which are novel. We obtained 356 metagenome-assembled genomes (MAGs) which were further clustered into 256 species-level genome bins with 41.8% being first reported in the current databases. Based on these data sets and through integrated analysis of the isolation of the related bacterial strains, in vitro infection, and RNA sequencing, we identified and confirmed that

Indexed as

adhesionlung lesionslung microbiomeMesomycoplasma hyopneumoniaemetagenome‐assembled genomespig

Identifiers

PMID39742304
PMCPMC11683470

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.