Evidence map›Paper›PMID 39739822›Full record

ArticleNucleic acids research2025

Neutrophil extracellular traps have active DNAzymes that promote bactericidal activity.

Ti-Hsuan Ku, Nikhil Ram-Mohan, Elizabeth J Zudock, Ryuichiro Abe, Samuel Yang

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Extracellular heme:DNA complexes promote oxidative stress and inflammation during lupus-associated hemolysis.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  6. Article
  7. Review
  8. Frontiers in immunology · 2026
    Article
  9. Article
  10. Tandem ssDNA in neutrophil extracellular traps binds thrombin and regulates immunothrombosis.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Ti-Hsuan KuDepartment of Emergency Medicine, Stanford University, 240 Pasteur Drive Rm 0300 Stanford, CA 94305, USA.
Nikhil Ram-MohanDepartment of Emergency Medicine, Stanford University, 240 Pasteur Drive Rm 0300 Stanford, CA 94305, USA.ORCID 0000-0002-7761-2772
Elizabeth J ZudockDepartment of Emergency Medicine, Stanford University, 240 Pasteur Drive Rm 0300 Stanford, CA 94305, USA.
Ryuichiro AbeDepartment of Emergency Medicine, Stanford University, 240 Pasteur Drive Rm 0300 Stanford, CA 94305, USA.
Samuel YangDepartment of Emergency Medicine, Stanford University, 240 Pasteur Drive Rm 0300 Stanford, CA 94305, USA.ORCID 0000-0003-1123-9036

Funding

Changing Cultures in Sepsis: Rapid single-cell pathogen identification and antibiotic susceptibility testing directly from whole bloodR01AI153133 · NIAID · STANFORD UNIVERSITY · PI WONG, PAK KIN, YANG, SAMUEL · 2020 to 2024
$3.7M
A "Culture" Shift: Integrated Bacterial Screening and Antibacterial Susceptibility Test on Microfluidic Digital Array for Bloodstream InfectionsR01AI137272 · NIAID · JOHNS HOPKINS UNIVERSITY · PI WANG, TZA-HUEI JEFF, YANG, SAMUEL · 2018 to 2022
$3.6M
Circulating Bacteriophages for the Diagnosis of SepsisR21GM147838 · NIGMS · STANFORD UNIVERSITY · PI BOLLYKY, PAUL L, YANG, SAMUEL · 2022 to 2023
$429k
Neutrophil Extracellular Traps are Free-Radical Generating DNAzymesR21AI178026 · NIAID · STANFORD UNIVERSITY · PI YANG, SAMUEL · 2024 to 2025
$419k
NIAID NIH HHS R01 AI137272NIAID NIH HHS R01 AI153133NIAID NIH HHS R21 AI178026NIGMS NIH HHS R21 GM147838NIH HHS R01AI153133
6 · The paper itself

Abstract

The mechanisms of bacterial killing by neutrophil extracellular traps (NETs) are unclear. DNA, the largest component of NETs was believed to merely be a scaffold with antimicrobial activity only through the charge of the backbone. Here, we demonstrate for the first time that NETs DNA is beyond a mere scaffold to trap bacteria and it produces hydroxyl free radicals through the spatially concentrated G-quadruplex/hemin DNAzyme complexes, driving bactericidal effects. Immunofluorescence staining showed potential colocalization of G-quadruplex and hemin in extruded NETs DNA, and Amplex UltraRed assay portrayed its peroxidase activity. Proximity labeling of bacteria revealed localized concentration of radicals resulting from NETs bacterial trapping. Ex vivo bactericidal assays revealed that G-quadruplex/hemin DNAzyme is the primary driver of bactericidal activity in NETs. NETs are DNAzymes that may have important biological consequences.

Indexed as

DNA, CatalyticExtracellular TrapsNeutrophilsAnti-Bacterial AgentsG-QuadruplexesHeminHumansHydroxyl RadicalAnti-Bacterial AgentsDNA, CatalyticHeminHydroxyl Radical

Identifiers

PMID39739822
PMCPMC11797030

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.