Evidence map›Paper›PMID 39739000›Full record

ArticleCommunications engineering2024

Microscopy image reconstruction with physics-informed denoising diffusion probabilistic model.

Rui Li, Gabriel Della Maggiora, Vardan Andriasyan, Anthony Petkidis, Artsemi Yushkevich, Nikita Deshpande, Mikhail Kudryashev, Artur Yakimovich

Abstract read
In one paragraph

Article in Communications engineering, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Deep Learning for Localization Microscopy in 2D and 3D.Accounts of chemical research · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Rui Li *Center for Advanced Systems Understanding (CASUS), Görlitz, Germany.
Gabriel Della Maggiora *Center for Advanced Systems Understanding (CASUS), Görlitz, Germany.
Vardan AndriasyanDepartment of Molecular Life Sciences, University of Zurich, Zurich, Switzerland.
Anthony PetkidisDepartment of Molecular Life Sciences, University of Zurich, Zurich, Switzerland.
Artsemi YushkevichIn situ Structural Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany.
Nikita DeshpandeCenter for Advanced Systems Understanding (CASUS), Görlitz, Germany.
Mikhail KudryashevIn situ Structural Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany.
Artur YakimovichCenter for Advanced Systems Understanding (CASUS), Görlitz, Germany. a.yakimovich@hzdr.de.ORCID http://orcid.org/0000-0003-2458-4904

Funding

Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) CASUS
6 · The paper itself

Abstract

Light microscopy is a practical tool for advancing biomedical research and diagnostics, offering invaluable insights into the cellular and subcellular structures of living organisms. However, diffraction and optical imperfections actively hinder the attainment of high-quality images. In recent years, there has been a growing interest in applying deep learning techniques to overcome these challenges in light microscopy imaging. Nonetheless, the resulting reconstructions often suffer from undesirable artefacts and hallucinations. Here, we introduce a deep learning-based approach that incorporates the fundamental physics of light propagation in microscopy into the loss function. This model employs a conditioned diffusion model in a physics-informed architecture. To mitigate the issue of limited available data, we utilise synthetic datasets for training purposes. Our results demonstrate consistent enhancements in image quality and substantial reductions in artefacts when compared to state-of-the-art methods. The presented technique is intuitively accessible and allows obtaining higher quality microscopy images for biomedical studies.

Identifiers

PMID39739000
PMCPMC11683148

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.