Evidence map›Paper›PMID 39738627›Full record

ArticleScientific reports2024

Description and phylogenetic implications of a de novo mitochondrial genome of Rhinichthys atratulus (Teleostei: Leuciscidae) from Connecticut.

Timothy S Earley, Naomi Whitlock, Samuel J Taylor, Antonio Machado-Allison, Barry Chernoff

Erratum issuedAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Timothy S Earley *Bailey College of the Environment, Wesleyan University, Middletown, CT, USA. tearley@wesleyan.edu.
Naomi Whitlock *Department of Biology, Wesleyan University, Middletown, CT, USA.
Samuel J TaylorDepartment of Biology, Wesleyan University, Middletown, CT, USA.
Antonio Machado-AllisonBailey College of the Environment, Wesleyan University, Middletown, CT, USA.
Barry ChernoffBailey College of the Environment, Wesleyan University, Middletown, CT, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present a de novo mitogenome assembly from a specimen of Rhinichthys atratulus, the Eastern Blacknose Dace, collected in the Connecticut River drainage. R. atratulus is a fish species widely distributed across Atlantic slope drainages from Nova Scotia, Canada to the Roanoke River Drainage, Virginia, United States. The assembly has a total length of 16,646 bp; consists of 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and a 974 bp D-loop; and has a GC content of 45.7%. We performed two phylogenetic analyses using the de novo assembly and 28 additional cyprinoid mitochondrial genomes: with and without the D-loop. The resulting phylogenetic trees showed the same branching patterns. However, inclusion of the D-loop resulted in nodes with equal or greater support. The trees largely match previously published analyses, while offering new insights into relationships among leuciscid genera. Our findings indicate that the inclusion of the D-loop in mitogenome phylogenetic analyses can help improve bootstrap support at otherwise unresolved nodes.

Indexed as

Genome, MitochondrialPhylogenyAnimalsBase CompositionConnecticutRNA, TransferRNA, Transfer

Identifiers

PMID39738627
PMCPMC11686256

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.