Evidence map›Paper›PMID 39738612›Full record

ArticleScientific reports2024

Construction and validation of a senescence-related gene signature for early prediction and treatment of osteoarthritis based on bioinformatics analysis.

Yonggang Wang, Zhihao Li, Xiaolong Xu, Xin Li, Rongxiang Huang, Guofeng Wu

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. 2-Methoxystypandrone fromAntioxidants (Basel, Switzerland) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yonggang WangDepartment of Spinal Surgery, Jingzhou Hospital Affiliated to Yangtze University, Jingzhou, Hubei, China.
Zhihao LiDepartment of Spinal Surgery, Jingzhou Hospital Affiliated to Yangtze University, Jingzhou, Hubei, China.
Xiaolong XuDepartment of Plastic Surgery, Xiangya Hospital, Central South University, Changsha, Hunan, China.
Xin LiDepartment of Orthopedics, Southern University of Science and Technology Hospital, Shenzhen, Guangdong, China.
Rongxiang HuangDepartment of Orthopedics, Southern University of Science and Technology Hospital, Shenzhen, Guangdong, China. hrx-surgeon@qq.com.
Guofeng WuDepartment of Orthopedics, Southern University of Science and Technology Hospital, Shenzhen, Guangdong, China. 386629390@qq.com.

Funding

Nanshan District Health System Science and Technology Major Project NSZD2023065the Dean's Fund of Southern University of Science and Technology Hospital 2022-A2
6 · The paper itself

Abstract

The aim of this study is to screen key target genes of osteoarthritis associated with aging and to preliminarily explore the associated immune infiltration cells and potential drugs. Differentially expressed senescence-related genes (DESRGs) selected from Cellular senescence-related genes (SRGs) and differentially expressed genes (DEGs) were analyzed using Gene Ontology enrichment, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways and protein-protein interaction networks. Hub genes in DESRGs were selected based on degree, and diagnostic genes were further screened by gene expression and receiver operating characteristic (ROC) curve. CIBERSORTx and ssGSEA algorithms were then used to assess immune cell infiltration and to analyse the correlation between key DESRGs and immune infiltration. Finally, a miRNA-gene network of diagnostic genes was constructed and targeted drug prediction was performed. Combined with the DEGs and SRGs, we screened 19 DESRGs for further study. Five diagnostic genes were ultimately identified: CDKN1A, VEGFA, MCL1, SNAI1 and MYC. ROC analysis showed that the area under the curve (AUC). Correlation analysis showed that the five hub genes were closely associated with neutrophil, plasmacytoid dendritic cell, activated CD4 T-cell and type 2 T-helper cell infiltration in the development of Osteoarthritis (OA). Finally, we found that drugs such as lithium chloride, acetaminophen, curcumin, celecoxib and resveratrol could be targeted for the treatment of senescence-related OA. The results of this study indicate that CDKN1A, VEGFA, MCL1, SNAI1, and MYC are key biomarkers that can be used to predict and prevent early aging-related OA. Lithium chloride, acetaminophen, curcumin, celecoxib, and resveratrol can be used for personalized treatment of aging-related OA.

Indexed as

Cellular SenescenceComputational BiologyOsteoarthritisAgingGene Expression ProfilingGene Regulatory NetworksHumansMicroRNAsProtein Interaction MapsROC CurveTranscriptomeMicroRNAsBioinformaticsImmune InfiltrationOsteoarthritisSenescenceSenescence-related genes

Identifiers

PMID39738612
PMCPMC11686076

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