Evidence map›Paper›PMID 39738340›Full record

ArticleScientific reports2024

Soil bacterial communities in urban deciduous forests are filtered by site identity, soil chemistry, and shrub presence.

Derek Griffin Wu, Vincent D'Amico, Tara Lynn Eckard Trammell

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Derek Griffin WuDepartment of Plant and Soil Sciences, University of Delaware, Newark, DE, USA. derekgwu@udel.edu.
Vincent D'AmicoUSDA Forest Service, Northern Research Station, NRS-08, Newark, DE, USA.
Tara Lynn Eckard TrammellDepartment of Plant and Soil Sciences, University of Delaware, Newark, DE, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Urban forest soils are complex environments subjected to various stressors that alter chemical and microbial properties. To understand soil chemistry and bacterial community patterns in urban forest soils with respect to site identity and multiflora rose (Rosa multiflora) invasion, soils were collected from beneath R. multiflora, native spice bush (Lindera benzoin), and uncovered ground in three forests in Newark, Delaware. High-throughput sequencing was used to analyze bacterial communities with corresponding soil chemical properties. Soil chemistry and operational taxonomic unit (OTU) communities were explained by site rather than by shrub cover type. Unlike other invasive plant studies, R. multiflora had minimal effects on either soil chemistry or bacterial communities. Phylum level bacterial communities were more uniform under shrub cover versus no cover, indicative of a generalized plant effect shaping soil microbiomes. Correlations between bacterial phyla and soil chemistry varied, with some phyla positively or negatively correlating with the same property at different sites. Filters for bacterial communities differ across forest scales, where sites and sampling location primarily correlate with OTU communities yet shrub presence mediates phylum level organization. Forest soil studies should consider location-based differences in bacterial communities and their correlations with soil chemistry before generalizing outcomes for whole macrosystems.

Indexed as

BacteriaForestsMicrobiotaSoilSoil MicrobiologyDelawareHigh-Throughput Nucleotide SequencingRosaSoil

Identifiers

PMID39738340
PMCPMC11686066

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.