Evidence map›Paper›PMID 39738110›Full record

ArticleNature communications2024

Unsupervised inter-domain transformation for virtually stained high-resolution mid-infrared photoacoustic microscopy using explainable deep learning.

Eunwoo Park, Sampa Misra, Dong Gyu Hwang, Chiho Yoon, Joongho Ahn, Donggyu Kim, Jinah Jang, Chulhong Kim

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Eunwoo Park *Department of Convergence IT Engineering, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea.ORCID 0000-0001-7954-7911
Sampa Misra *Department of Convergence IT Engineering, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea.
Dong Gyu Hwang *Medical Device Innovation Center, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea.ORCID 0000-0001-7917-1336
Chiho YoonMedical Device Innovation Center, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea.ORCID 0000-0003-3971-3115
Joongho AhnMedical Device Innovation Center, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea.ORCID 0000-0002-5355-4125
Donggyu KimDepartment of Convergence IT Engineering, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea.
Jinah JangDepartment of Convergence IT Engineering, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea. jinahjang@postech.ac.kr.ORCID 0000-0001-9046-3495
Chulhong KimDepartment of Convergence IT Engineering, Pohang University of Science and Technology (POSTECH), Pohang, Republic of Korea. chulhong@postech.edu.ORCID 0000-0001-7249-1257

Funding

Ministry of Education (Ministry of Education of the Republic of Korea) 2020R1A6A1A03047902
6 · The paper itself

Abstract

Mid-infrared photoacoustic microscopy can capture biochemical information without staining. However, the long mid-infrared optical wavelengths make the spatial resolution of photoacoustic microscopy significantly poorer than that of conventional confocal fluorescence microscopy. Here, we demonstrate an explainable deep learning-based unsupervised inter-domain transformation of low-resolution unlabeled mid-infrared photoacoustic microscopy images into confocal-like virtually fluorescence-stained high-resolution images. The explainable deep learning-based framework is proposed for this transformation, wherein an unsupervised generative adversarial network is primarily employed and then a saliency constraint is added for better explainability. We validate the performance of explainable deep learning-based mid-infrared photoacoustic microscopy by identifying cell nuclei and filamentous actins in cultured human cardiac fibroblasts and matching them with the corresponding CFM images. The XDL ensures similar saliency between the two domains, making the transformation process more stable and more reliable than existing networks. Our XDL-MIR-PAM enables label-free high-resolution duplexed cellular imaging, which can significantly benefit many research avenues in cell biology.

Indexed as

Deep LearningFibroblastsPhotoacoustic TechniquesCell NucleusHumansImage Processing, Computer-AssistedInfrared RaysMicroscopyMicroscopy, ConfocalUnsupervised Machine Learning

Identifiers

PMID39738110
PMCPMC11685655

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.