Evidence map›Paper›PMID 39737877›Full record

ArticleThe Journal of cell biology2025

SARS-CoV-2 NSP3/4 control formation of replication organelle and recruitment of RNA polymerase NSP12.

Jinping Yang, Buyun Tian, Pei Wang, Rongrong Chen, Ke Xiao, Xubing Long, Xinyue Zheng, Yun Zhu, Fei Sun, Yongxia Shi and 5 more

Abstract read
In one paragraph

Article in The Journal of cell biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Jinping Yang *Key Laboratory of Molecular Biophysics of the Ministry of Education, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China.ORCID 0009-0002-1312-198X
Buyun Tian *Guangzhou National Laboratory , Guangzhou, China.ORCID 0000-0002-0027-5499
Pei Wang *Guangzhou National Laboratory , Guangzhou, China.ORCID 0000-0001-5612-705X
Rongrong Chen *Guangzhou National Laboratory , Guangzhou, China.ORCID 0009-0009-5998-7237
Ke XiaoNational Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.ORCID 0000-0002-9694-5820
Xubing LongGuangzhou National Laboratory , Guangzhou, China.ORCID 0009-0005-2048-0413
Xinyue ZhengCollege of Life Sciences, University of Chinese Academy of Sciences , Beijing, China.ORCID 0009-0008-4013-2215
Yun ZhuNational Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.ORCID 0000-0001-9382-8592
Fei SunNational Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.ORCID 0000-0002-0351-5144
Yongxia ShiState Key Laboratory of Respiratory Disease, Health Quarantine Institute of IQTC, Guangzhou Customs District, Guangzhou, China.ORCID 0000-0003-3590-2365
Yaming JiuCollege of Life Sciences, University of Chinese Academy of Sciences , Beijing, China.ORCID 0000-0002-8601-8820
Wei JiNational Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.ORCID 0000-0002-2317-9053
Yanhong XueNational Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.ORCID 0000-0003-3214-4175
Tao XuGuangzhou National Laboratory , Guangzhou, China.ORCID 0000-0002-8260-9754
Zonghong LiGuangzhou National Laboratory , Guangzhou, China.ORCID 0000-0002-5153-0007

Funding

Guangdong Province High-level Talent Youth Project 2021QN02Y939National Key R&D Program of China 2024YFA1307400National Natural Science Foundation of China 92469107R&D Program of Guangzhou Laboratory ZL-SRPG22-002STI2030-Major Projects 2022ZD0211900
6 · The paper itself

Abstract

β-coronavirus rearranges the host cellular membranes to form double-membrane vesicles (DMVs) via NSP3/4, which anchor replication-transcription complexes (RTCs), thereby constituting the replication organelles (ROs). However, the impact of specific domains within NSP3/4 on DMV formation and RO assembly remains largely unknown. By using cryogenic-correlated light and electron microscopy (cryo-CLEM), we discovered that the N-terminal and C-terminal domains (NTD and CTD) of SARS-CoV-2 NSP3 are essential for DMV formation. Nevertheless, the CTD of NSP4 is not essential for DMV formation but regulates the DMV numbers. Additionally, the NTD of NSP3 is required for recruiting the RTC component to the cytosolic face of DMVs through direct interaction with NSP12 to assemble ROs. Furthermore, we observed that the size of NSP3/4-induced DMVs is smaller than virus-induced DMVs and established that RTC-mediated synthesis of double-stranded RNA (dsRNA) cargo plays a crucial role in determining DMV size. Collectively, our findings reveal that β-coronaviruses exploit the NSP3/4/12 axis to establish the viral ROs.

Indexed as

SARS-CoV-2Viral Nonstructural ProteinsVirus ReplicationAnimalsCoronavirus Papain-Like ProteasesCoronavirus RNA-Dependent RNA PolymeraseCOVID-19Cryoelectron MicroscopyHEK293 CellsHumansOrganellesProtein DomainsRNA, ViralViral Replication CompartmentsCoronavirus Papain-Like ProteasesCoronavirus RNA-Dependent RNA PolymeraseNSP12 protein, SARS-CoV-2RNA, ViralViral Nonstructural Proteins

Identifiers

PMID39737877
PMCPMC11687299

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.