Evidence map›Paper›PMID 39736848›Full record

ArticleISME communications2024

Tracing active members in microbial communities by BONCAT and click chemistry-based enrichment of newly synthesized proteins.

Patrick Hellwig, Daniel Kautzner, Robert Heyer, Anna Dittrich, Daniel Wibberg, Tobias Busche, Anika Winkler, Udo Reichl, Dirk Benndorf

Abstract read
In one paragraph

Article in ISME communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Patrick HellwigOtto-von-Guericke University Magdeburg, Bioprocess Engineering, Universitätsplatz 2, 39106 Magdeburg, Saxony-Anhalt, Germany.ORCID https://orcid.org/0000-0003-3280-9042
Daniel KautznerMultidimensional Omics Analyses Group, Faculty of Technology, Bielefeld University, Universitätsstraße 25, 33615 Bielefeld, North Rhine-Westphalia, Germany.
Robert HeyerMultidimensional Omics Analyses Group, Faculty of Technology, Bielefeld University, Universitätsstraße 25, 33615 Bielefeld, North Rhine-Westphalia, Germany.
Anna DittrichDepartment of Systems Biology, Institute of Biology, Otto-von-Guericke University Magdeburg, Universitätsplatz 2, 39106 Magdeburg, Saxony-Anhalt, Germany.ORCID https://orcid.org/0000-0002-1056-4219
Daniel WibbergInstitute for Genome Research and Systems Biology, CeBiTec, Bielefeld University, Universitätsstraße 25, 33615 Bielefeld, North Rhine-Westphalia, Germany.ORCID https://orcid.org/0000-0002-1331-4311
Tobias BuscheCenter for Biotechnology-CeBiTec, Bielefeld University, Universitätsstraße 27, 33615 Bielefeld, North Rhine-Westphalia, Germany.ORCID https://orcid.org/0000-0001-9211-8927
Anika WinklerCenter for Biotechnology-CeBiTec, Bielefeld University, Universitätsstraße 27, 33615 Bielefeld, North Rhine-Westphalia, Germany.
Udo ReichlOtto-von-Guericke University Magdeburg, Bioprocess Engineering, Universitätsplatz 2, 39106 Magdeburg, Saxony-Anhalt, Germany.ORCID https://orcid.org/0000-0001-6538-1332
Dirk BenndorfOtto-von-Guericke University Magdeburg, Bioprocess Engineering, Universitätsplatz 2, 39106 Magdeburg, Saxony-Anhalt, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A comprehensive understanding of microbial community dynamics is fundamental to the advancement of environmental microbiology, human health, and biotechnology. Metaproteomics, defined as the analysis of all proteins present within a microbial community, provides insights into these complex systems. Microbial adaptation and activity depend to an important extent on newly synthesized proteins (nP), however, the distinction between nP and bulk proteins is challenging. The application of BONCAT with click chemistry has demonstrated efficacy in the enrichment of nP in pure cultures for proteomics. However, the transfer of this technique to microbial communities and metaproteomics has proven challenging and thus it has not not been used on microbial communities before. To address this, a new workflow with efficient and specific nP enrichment was developed using a laboratory-scale mixture of labelled

Indexed as

anaerobic digestionbiogasBONCATclick chemistrymass spectrometrymetagenomicsmetaproteomicsmicrobial activitymicrobial interactionsmicrobiome

Identifiers

PMID39736848
PMCPMC11683836

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.