Evidence map›Paper›PMID 39736527›Full record

ArticleBMC medical research methodology2024

A prediction approach to COVID-19 time series with LSTM integrated attention mechanism and transfer learning.

Bin Hu, Yaohui Han, Wenhui Zhang, Qingyang Zhang, Wen Gu, Jun Bi, Bi Chen, Lishun Xiao

Erratum issuedAbstract read
In one paragraph

Article in BMC medical research methodology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Bin Hu *School of Public Health, Xuzhou Medical University, No. 209 Tongshan Road, Xuzhou, Jiangsu, 221004, China.
Yaohui Han *School of Public Health, Xuzhou Medical University, No. 209 Tongshan Road, Xuzhou, Jiangsu, 221004, China.
Wenhui Zhang *Department of Pulmonary and Critical Care Medicine, Affiliated Hospital of Xuzhou Medical University, No. 99 West Huaihai Road, Xuzhou, Jiangsu, 221006, China.
Qingyang ZhangUniversity of Nottingham, University Blv, Nottingham, NG7 2RD, England.
Wen GuSchool of Public Health, Xuzhou Medical University, No. 209 Tongshan Road, Xuzhou, Jiangsu, 221004, China.
Jun BiXuzhou Center for Disease Control and Prevention, No. 142 West Second Ring Road, Xuzhou, 221002, Jiangsu Province, China. xzcdcbj@126.com.
Bi ChenDepartment of Pulmonary and Critical Care Medicine, Affiliated Hospital of Xuzhou Medical University, No. 99 West Huaihai Road, Xuzhou, Jiangsu, 221006, China. chenbi207@126.com.
Lishun XiaoSchool of Public Health, Xuzhou Medical University, No. 209 Tongshan Road, Xuzhou, Jiangsu, 221004, China. xiaolishun@xzhmu.edu.cn.

Funding

China Postdoctoral Science Foundation 2020M671607Medical Research Project of Jiangsu Provincial Health Commission Z2020049National Natural Science Foundation of China 12001470Natural Science Foundation of the Jiangsu Higher Education Institutions of China 20KJB320011Open Research Project of the State Key Laboratory of Jiangsu Higher Education Institutions of China XZSYSKF2022004Scientific Research Project of Jiangsu Provincial Health Commission H2023005Social Development Project of Xuzhou Science and Technology Bureau KC21266Xuzhou Medical Key Talents Project XWRCHT20220063
6 · The paper itself

Abstract

backgroundThe prediction of coronavirus disease in 2019 (COVID-19) in broader regions has been widely researched, but for specific areas such as urban areas the predictive models were rarely studied. It may be inaccurate to apply predictive models from a broad region directly to a small area. This paper builds a prediction approach for small size COVID-19 time series in a city.

methodsNumbers of COVID-19 daily confirmed cases were collected from November 1, 2022 to November 16, 2023 in Xuzhou city of China. Classical deep learning models including recurrent neural network (RNN), long and short-term memory (LSTM), gated recurrent unit (GRU) and temporal convolutional network (TCN) are initially trained, then RNN, LSTM and GRU are integrated with a new attention mechanism and transfer learning to improve the performance. Ten times ablation experiments are conducted to show the robustness of the performance in prediction. The performances among the models are compared by the mean absolute error, root mean square error and coefficient of determination.

resultsLSTM outperforms than others, and TCN has the worst generalization ability. Thus, LSTM is integrated with the new attention mechanism to construct an LSTMATT model, which improves the performance. LSTMATT is trained on the smoothed time series curve through frequency domain convolution augmentation, then transfer learning is adopted to transfer the learned features back to the original time series resulting in a TLLA model that further improves the performance. RNN and GRU are also integrated with the attention mechanism and transfer learning and their performances are also improved, but TLLA still performs best.

conclusionsThe TLLA model has the best prediction performance for the time series of COVID-19 daily confirmed cases, and the new attention mechanism and transfer learning contribute to improve the prediction performance in the flatten part and the jagged part, respectively.

Indexed as

COVID-19Deep LearningNeural Networks, ComputerChinaForecastingHumansSARS-CoV-2COVID-19Deep learningLSTMTime seriesTransfer learning

Identifiers

PMID39736527
PMCPMC11686916

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.