Evidence map›Paper›PMID 39735343›Full record

ArticleNAR genomics and bioinformatics2024

Phenotype prediction in plants is improved by integrating large-scale transcriptomic datasets.

Zefeng Wu, Yali Sun, Xiaoqiang Zhao, Zigang Liu, Wenqi Zhou, Yining Niu

Abstract read
In one paragraph

Article in NAR genomics and bioinformatics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
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  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zefeng WuState Key Laboratory of Aridland Crop Science, Gansu Agricultural University, No. 1 Yingmen Village, Anning District, Lanzhou 730070, Gansu Province, China.ORCID 0000-0002-4404-238X
Yali SunState Key Laboratory of Aridland Crop Science, Gansu Agricultural University, No. 1 Yingmen Village, Anning District, Lanzhou 730070, Gansu Province, China.
Xiaoqiang ZhaoState Key Laboratory of Aridland Crop Science, Gansu Agricultural University, No. 1 Yingmen Village, Anning District, Lanzhou 730070, Gansu Province, China.
Zigang LiuState Key Laboratory of Aridland Crop Science, Gansu Agricultural University, No. 1 Yingmen Village, Anning District, Lanzhou 730070, Gansu Province, China.
Wenqi ZhouCrop Research Institute, Gansu Academy of Agricultural Sciences, No. 1, New Village, Anning District, Lanzhou 730070, Gansu Province, China.
Yining NiuState Key Laboratory of Aridland Crop Science, Gansu Agricultural University, No. 1 Yingmen Village, Anning District, Lanzhou 730070, Gansu Province, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Research on the dynamic expression of genes in plants is important for understanding different biological processes. We used the large amounts of transcriptomic data from various plant sample sources that are publicly available to investigate whether the expression levels of a subset of highly variable genes (HVGs) can be used to accurately identify the phenotypes of plants. Using maize (

Indexed as

Machine LearningOryzaTranscriptomeZea maysDatabases, GeneticGene Expression ProfilingGene Expression Regulation, PlantPhenotype

Identifiers

PMID39735343
PMCPMC11672113

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.