ArticleBiomedizinische Technik. Biomedical engineering2025
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9 citing papers in PubMed.
- Text-Driven Tumor Synthesis.IEEE transactions on medical imaging · 2026Article
- MedPTQ: a practical pipeline for real post-training quantization in 3D medical image segmentation.Journal of medical imaging (Bellingham, Wash.) · 2026Article
- ShapeMed-Knee: A Dataset and Neural Shape Model Benchmark for Modeling 3D Femurs.IEEE transactions on medical imaging · 2025Article
- Multisensory Extended Reality Applications Offer Benefits for Volumetric Biomedical Image Analysis in Research and Medicine.Journal of imaging informatics in medicine · 2025Article
- Sex classification of 3D skull images using deep neural networks.Scientific reports · 2024Article
- Diffusion Models To Predict 3D Late Mechanical Activation From Sparse 2D Cardiac MRIs.Proceedings of machine learning research · 2023Article
- 3D surgical instrument collection for computer vision and extended reality.Scientific data · 2023Article
- SADIR: Shape-Aware Diffusion Models for 3D Image Reconstruction.Shape in medical imaging : International Workshop, ShapeMI 2023, held in conjunction with MICCAI 2023, Vancouver, BC, Canada, October 8, 2023, Proceedings. ShapeMI (Workshop) (2023 : Vancouver, B.C.) · 2023Article
- Acquiring Aligned Endoscopic and Depth Image Pairs Using Structured-Light Projection, Neural Surfaces and an Electromagnetic Positional Sensor.Healthcare technology lettersArticle
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157 authors.
Jianning LiInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Zongwei ZhouDepartment of Computer Science, Johns Hopkins University, Baltimore, MD, USA.
Jiancheng YangComputer Vision Laboratory, Swiss Federal Institute of Technology Lausanne (EPFL), Lausanne, Switzerland.
Antonio PepeInstitute of Computer Graphics and Vision (ICG), Graz University of Technology, Graz, Austria.
Christina GsaxnerInstitute of Computer Graphics and Vision (ICG), Graz University of Technology, Graz, Austria.
Gijs LuijtenInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Chongyu QuDepartment of Computer Science, Johns Hopkins University, Baltimore, MD, USA.
Tiezheng ZhangDepartment of Computer Science, Johns Hopkins University, Baltimore, MD, USA.
Xiaoxi ChenDepartment of Radiology, Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China.
Wenxuan LiDepartment of Computer Science, Johns Hopkins University, Baltimore, MD, USA.
Marek WodzinskiDepartment of Measurement and Electronics, AGH University of Science and Technology, Krakow, Poland.
Paul FriedrichCenter for Medical Image Analysis & Navigation (CIAN), Department of Biomedical Engineering, University of Basel, Allschwil, Switzerland.
Kangxian XieDepartment of Computer Science and Engineering, University at Buffalo, SUNY, NY, 14260, USA.
Yuan JinInstitute of Computer Graphics and Vision (ICG), Graz University of Technology, Graz, Austria.
Narmada AmbigapathyInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Enrico NascaInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Naida SolakInstitute of Computer Graphics and Vision (ICG), Graz University of Technology, Graz, Austria.
Gian Marco MelitoInstitute of Mechanics, Graz University of Technology, Graz, Austria.
Viet Duc VuDepartment of Diagnostic and Interventional Radiology, University Hospital Giessen, Justus-Liebig-University Giessen, Giessen, Germany.
Afaque R MemonDepartment of Mechanical Engineering, Mehran University of Engineering and Technology, Jamshoro, Sindh, Pakistan.
Christopher SchlachtaCanadian Surgical Technologies & Advanced Robotics (CSTAR), University Hospital, London, Canada.
Sandrine De RibaupierreCanadian Surgical Technologies & Advanced Robotics (CSTAR), University Hospital, London, Canada.
Rajnikant PatelCanadian Surgical Technologies & Advanced Robotics (CSTAR), University Hospital, London, Canada.
Roy EaglesonCanadian Surgical Technologies & Advanced Robotics (CSTAR), University Hospital, London, Canada.
Xiaojun ChenState Key Laboratory of Mechanical System and Vibration, School of Mechanical Engineering, Institute of Biomedical Manufacturing and Life Quality Engineering, Shanghai Jiao Tong University, Shanghai, People's Republic of China.
Heinrich MächlerDepartment of Cardiac Surgery, Medical University Graz, Graz, Austria.
Jan Stefan KirschkeGeschäftsführender Oberarzt Abteilung für Interventionelle und Diagnostische Neuroradiologie, Universitätsklinikum der Technischen Universität München, München, Germany.
Ezequiel de la Rosaicometrix, Leuven, Belgium.
Patrick Ferdinand ChristDepartment of Quantitative Biomedicine, University of Zurich, Zurich, Switzerland.
Hongwei Bran LiDepartment of Quantitative Biomedicine, University of Zurich, Zurich, Switzerland.
David G EllisDepartment of Neurosurgery, University of Nebraska Medical Center, Omaha, NE, USA.
Michele R AizenbergDepartment of Neurosurgery, University of Nebraska Medical Center, Omaha, NE, USA.
Sergios GatidisUniversity Hospital of Tuebingen Diagnostic and Interventional Radiology Medical Image and Data Analysis (MIDAS.lab), Tuebingen, Germany.
Thomas KüstnerUniversity Hospital of Tuebingen Diagnostic and Interventional Radiology Medical Image and Data Analysis (MIDAS.lab), Tuebingen, Germany.
Nadya ShusharinaDivision of Radiation Biophysics, Department of Radiation Oncology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.
Nicholas HellerUniversity of Minnesota, Minneapolis, MN, USA.
Vincent AndrearczykInstitute of Informatics, HES-SO Valais-Wallis University of Applied Sciences and Arts Western Switzerland, Sierre, Switzerland.
Adrien DepeursingeInstitute of Informatics, HES-SO Valais-Wallis University of Applied Sciences and Arts Western Switzerland, Sierre, Switzerland.
Mathieu HattLaTIM, INSERM UMR 1101, Univ Brest, Brest, France.
Anjany SekuboyinaDepartment of Informatics, Technical University of Munich, Garching bei München, Germany.
Maximilian T LöfflerDepartment of Neuroradiology, Klinikum Rechts der Isar, Munich, Germany.
Hans LieblDepartment of Neuroradiology, Klinikum Rechts der Isar, Munich, Germany.
Reuben DorentKing's College London, Strand, London, UK.
Tom VercauterenKing's College London, Strand, London, UK.
Jonathan ShapeyKing's College London, Strand, London, UK.
Aaron KujawaKing's College London, Strand, London, UK.
Stefan CornelissenElisabeth-TweeSteden Hospital, Tilburg, Netherlands.
Patrick LangenhuizenElisabeth-TweeSteden Hospital, Tilburg, Netherlands.
Achraf Ben-HamadouCentre de Recherche en Numérique de Sfax, Laboratory of Signals, Systems, Artificial Intelligence and Networks, Sfax, Tunisia.
Ahmed RekikCentre de Recherche en Numérique de Sfax, Laboratory of Signals, Systems, Artificial Intelligence and Networks, Sfax, Tunisia.
Sergi PujadesInria, Université Grenoble Alpes, CNRS, Grenoble, France.
Edmond BoyerInria, Université Grenoble Alpes, CNRS, Grenoble, France.
Federico Bolelli"Enzo Ferrari" Department of Engineering, University of Modena and Reggio Emilia, Modena, Italy.
Costantino Grana"Enzo Ferrari" Department of Engineering, University of Modena and Reggio Emilia, Modena, Italy.
Luca Lumetti"Enzo Ferrari" Department of Engineering, University of Modena and Reggio Emilia, Modena, Italy.
Hamidreza SalehiDepartment of Artificial Intelligence in Medical Sciences, Faculty of Advanced Technologies in Medicine, Iran University of Medical Sciences, Tehran, Iran.
Jun MaDepartment of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, ON, Canada.
Yao ZhangShanghai AI Laboratory, Shanghai, People's Republic of China.
Ramtin GharleghiSchool of Mechanical and Manufacturing Engineering, UNSW, Sydney, NSW, Australia.
Susann BeierSchool of Mechanical and Manufacturing Engineering, UNSW, Sydney, NSW, Australia.
Arcot SowmyaSchool of Computer Science and Engineering, UNSW, Sydney, NSW, Australia.
Eduardo A Garza-VillarrealInstitute of Neurobiology, Universidad Nacional Autónoma de México Campus Juriquilla, Querétaro, Mexico.
Thania BalducciInstitute of Neurobiology, Universidad Nacional Autónoma de México Campus Juriquilla, Querétaro, Mexico.
Diego Angeles-ValdezInstitute of Neurobiology, Universidad Nacional Autónoma de México Campus Juriquilla, Querétaro, Mexico.
Roberto SouzaAdvanced Imaging and Artificial Intelligence Lab, Electrical and Software Engineering Department, The Hotchkiss Brain Institute, University of Calgary, Calgary, Canada.
Leticia RittnerMedical Image Computing Lab, School of Electrical and Computer Engineering (FEEC), University of Campinas, Campinas, Brazil.
Richard FrayneRadiology and Clinical Neurosciences Departments, The Hotchkiss Brain Institute, University of Calgary, Calgary, Canada.
Yuanfeng JiUniversity of Hongkong, Pok Fu Lam, Hong Kong, People's Republic of China.
Vincenzo FerrariDipartimento di Ingegneria dell'Informazione, University of Pisa, Pisa, Italy.
Soumick ChatterjeeData and Knowledge Engineering Group, Faculty of Computer Science, Otto von Guericke University Magdeburg, Magdeburg, Germany.
Florian DubostStanford University, Stanford, CA, USA.
Stefanie SchreiberGerman Centre for Neurodegenerative Disease, Magdeburg, Germany.
Hendrik MatternGerman Centre for Neurodegenerative Disease, Magdeburg, Germany.
Oliver SpeckGerman Centre for Neurodegenerative Disease, Magdeburg, Germany.
Daniel HaehnUniversity of Massachusetts Boston, Boston, MA, USA.
Christoph JohnEcubed Solutions, Bensheim, Germany.
Andreas NürnbergerCentre for Behavioural Brain Sciences, Magdeburg, Germany.
João PedrosaInstitute for Systems and Computer Engineering, Technology and Science (INESC TEC), Porto, Portugal.
Carlos FerreiraInstitute for Systems and Computer Engineering, Technology and Science (INESC TEC), Porto, Portugal.
Guilherme ArestaChristian Doppler Lab for Artificial Intelligence in Retina, Department of Ophthalmology and Optometry, Medical University of Vienna, Vienna, Austria.
António CunhaInstitute for Systems and Computer Engineering, Technology and Science (INESC TEC), Porto, Portugal.
Aurélio CampilhoInstitute for Systems and Computer Engineering, Technology and Science (INESC TEC), Porto, Portugal.
Yannick SuterARTORG Center for Biomedical Engineering Research, University of Bern, Bern, Switzerland.
Jose GarciaCenter for Biomedical Image Computing and Analytics (CBICA), Perelman School of Medicine, University of Pennsylvania, Philadelphia, USA.
Alain LalandeICMUB Laboratory, Faculty of Medicine, CNRS UMR 6302, University of Burgundy, Dijon, France.
Vicky VandenbosscheDepartment of Human Structure and Repair, Ghent University, Ghent, Belgium.
Aline Van OevelenDepartment of Human Structure and Repair, Ghent University, Ghent, Belgium.
Kate DuquesneDepartment of Human Structure and Repair, Ghent University, Ghent, Belgium.
Hamza MekhzoumDepartment of Electronics and Informatics (ETRO), Vrije Universiteit Brussel, Brussels, Belgium.
Jef VandemeulebrouckeDepartment of Electronics and Informatics (ETRO), Vrije Universiteit Brussel, Brussels, Belgium.
Emmanuel AudenaertDepartment of Human Structure and Repair, Ghent University, Ghent, Belgium.
Claudia KrebsDepartment of Cellular and Physiological Sciences, Life Sciences Centre, University of British Columbia, Vancouver, BC, Canada.
Timo van LeeuwenDepartment of Development & Regeneration, KU Leuven Campus Kulak, Kortrijk, Belgium.
Evie VereeckeDepartment of Development & Regeneration, KU Leuven Campus Kulak, Kortrijk, Belgium.
Hauke HeidemeyerInstitute of Medical Informatics, University Hospital RWTH Aachen, Aachen, Germany.
Rainer RöhrigInstitute of Medical Informatics, University Hospital RWTH Aachen, Aachen, Germany.
Frank HölzleDepartment of Oral and Maxillofacial Surgery, University Hospital RWTH Aachen, Aachen, Germany.
Vahid BadeliInstitute of Fundamentals and Theory in Electrical Engineering, Graz University of Technology, Graz, Austria.
Kathrin KriegerLeibniz-Institut für Analytische Wissenschaften-ISAS-e.V., Dortmund, Germany.
Matthias GunzerLeibniz-Institut für Analytische Wissenschaften-ISAS-e.V., Dortmund, Germany.
Jianxu ChenLeibniz-Institut für Analytische Wissenschaften-ISAS-e.V., Dortmund, Germany.
Timo van MeegdenburgInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Amin DadaInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Miriam BalzerInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Jana FragemannInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Frederic JonskeInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Moritz RempeInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Stanislav MalorodovInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Fin H BahnsenInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Constantin SeiboldInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Alexander JausComputer Vision for Human-Computer Interaction Lab, Department of Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany.
Zdravko MarinovComputer Vision for Human-Computer Interaction Lab, Department of Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany.
Paul F JaegerGerman Cancer Research Center (DKFZ) Heidelberg, Interactive Machine Learning Group, Heidelberg, Germany.
Rainer StiefelhagenComputer Vision for Human-Computer Interaction Lab, Department of Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany.
Ana Sofia SantosInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Mariana LindoInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
André FerreiraInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Victor AlvesCenter Algoritmi, LASI, University of Minho, Braga, Portugal.
Michael KampInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Amr AbourayyaInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Felix NensaInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Fabian HörstInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Alexander BrehmerInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Lukas HeineInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Yannik HanusrichterDepartment of Tumour Orthopaedics and Revision Arthroplasty, Orthopaedic Hospital Volmarstein, Wetter, Germany.
Martin WeßlingDepartment of Tumour Orthopaedics and Revision Arthroplasty, Orthopaedic Hospital Volmarstein, Wetter, Germany.
Marcel DuddaDepartment of Trauma, Hand and Reconstructive Surgery, University Hospital Essen, Essen, Germany.
Lars E PodleskaDepartment of Tumor Orthopedics and Sarcoma Surgery, University Hospital Essen (AöR), Essen, Germany.
Matthias A FinkClinic for Diagnostic and Interventional Radiology, University Hospital Heidelberg, Heidelberg, Germany.
Julius KeylInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Konstantinos TserpesDepartment of Informatics and Telematics, Harokopio University of Athens, Tavros, Greece.
Moon-Sung KimInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Shireen ElhabianScientific Computing and Imaging Institute, University of Utah, Salt Lake City, USA.
Hans LameckerStryker Berlin GmbH, Germany.
Dženan ZukićMedical Computing, Kitware Inc., Carrboro, NC, USA.
Beatriz PaniaguaMedical Computing, Kitware Inc., Carrboro, NC, USA.
Christian WachingerLab for Artificial Intelligence in Medical Imaging, Department of Radiology, Technical University Munich, Munich, Germany.
Martin UrschlerInstitute for Medical Informatics, Statistics and Documentation, Medical University Graz, Graz, Austria.
Luc DuongDepartment of Software and IT Engineering, Ecole de Technologie Superieure, Montreal, Quebec, Canada.
Jakob WasserthalClinic of Radiology & Nuclear Medicine, University Hospital Basel, Basel, Switzerland.
Peter F HoyerPediatric Clinic II, University Children's Hospital Essen, University Duisburg-Essen, Essen, Germany.
Oliver BasuPediatric Clinic III, University Children's Hospital Essen, University Duisburg-Essen, Essen, Germany.
Thomas MaalRadboudumc 3D-Lab , Department of Oral and Maxillofacial Surgery , Radboud University Nijmegen Medical Centre, Nijmegen , The Netherlands.
Max J H Witjes3D Lab, Department of Oral and Maxillofacial Surgery, University Medical Center Groningen, Groningen, the Netherlands.
Gregor SchieleIntelligent Embedded Systems Lab, University of Duisburg-Essen, Bismarckstraße 90, 47057 Duisburg, Germany.
Ti-Chiun ChangMRL, Merck & Co., Inc., Rahway, NJ 07065, USA.
Seyed-Ahmad AhmadiNVIDIA GmbH, Bavaria Towers - Blue Tower, Munich, Germany.
Ping LuoUniversity of Hongkong, Pok Fu Lam, Hong Kong, People's Republic of China.
Bjoern MenzeDepartment of Quantitative Biomedicine, University of Zurich, Zurich, Switzerland.
Mauricio ReyesARTORG Center for Biomedical Engineering Research, University of Bern, Bern, Switzerland.
Thomas M DesernoPeter L. Reichertz Institute for Medical Informatics of TU Braunschweig and Hannover Medical School, Braunschweig, Germany.
Christos DavatzikosCenter for Biomedical Image Computing and Analytics , Penn Neurodegeneration Genomics Center , University of Pennsylvania, Philadelphia , PA , USA ; and Center for AI and Data Science for Integrated Diagnostics, University of Pennsylvania, Philadelphia, PA, USA.
Behrus PuladiDepartment of Oral and Maxillofacial Surgery, University Hospital RWTH Aachen, Aachen, Germany.
Pascal FuaComputer Vision Laboratory, Swiss Federal Institute of Technology Lausanne (EPFL), Lausanne, Switzerland.
Alan L YuilleDepartment of Computer Science, Johns Hopkins University, Baltimore, MD, USA.
Jens KleesiekInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Jan EggerInstitute for Artificial Intelligence in Medicine (IKIM), University Hospital Essen (AöR), Essen, Germany.
Funding
Computer-Aided Diagnosis of Pulmonary EmbolismR01HL128785 · NHLBI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI LIANG, JIANMING · 2016 to 2019
$2.5MAutomated Multi-Timepoint CT Analysis for Enhanced Metastatic Disease Evaluation in Colorectal Cancer: An Anatomy-Aware Vision-Language AI ApproachR01EB037669 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Kang Wang, Yang Yang · 2025 to 2026
$1.4MNHLBI NIH HHS R01 HL128785NIBIB NIH HHS R01 EB037669
Abstract
objectivesThe shape is commonly used to describe the objects. State-of-the-art algorithms in medical imaging are predominantly diverging from computer vision, where voxel grids, meshes, point clouds, and implicit surface models are used. This is seen from the growing popularity of ShapeNet (51,300 models) and Princeton ModelNet (127,915 models). However, a large collection of anatomical shapes (e.g., bones, organs, vessels) and 3D models of surgical instruments is missing.
methodsWe present MedShapeNet to translate data-driven vision algorithms to medical applications and to adapt state-of-the-art vision algorithms to medical problems. As a unique feature, we directly model the majority of shapes on the imaging data of real patients. We present use cases in classifying brain tumors, skull reconstructions, multi-class anatomy completion, education, and 3D printing.
resultsBy now, MedShapeNet includes 23 datasets with more than 100,000 shapes that are paired with annotations (ground truth). Our data is freely accessible via a web interface and a Python application programming interface and can be used for discriminative, reconstructive, and variational benchmarks as well as various applications in virtual, augmented, or mixed reality, and 3D printing.
conclusionsMedShapeNet contains medical shapes from anatomy and surgical instruments and will continue to collect data for benchmarks and applications. The project page is: https://medshapenet.ikim.nrw/.
Indexed as
Image Processing, Computer-AssistedImaging, Three-DimensionalAlgorithmsBrain NeoplasmsHumansPrinting, Three-Dimensional3D medical shapesanatomy educationaugmented realitybenchmarkshapeomicsvirtual reality
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