Evidence map›Paper›PMID 39732982›Full record

ArticleScientific reports2024

Complete mitochondrial genome sequencing and phylogenetic analysis of Phellinus igniarius.

Qingxu He, Yuxin Jiang, Yilin Li, Tianzhao Guan, Xiuli Jing, Chao Meng

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Qingxu He *College of Life sciences, Shandong First Medical University and Shandong Academy of Medical Sciences, Tai'an, 271016, China.
Yuxin Jiang *College of Life sciences, Shandong First Medical University and Shandong Academy of Medical Sciences, Tai'an, 271016, China.
Yilin Li *College of Life sciences, Shandong First Medical University and Shandong Academy of Medical Sciences, Tai'an, 271016, China.
Tianzhao GuanCollege of Life sciences, Shandong First Medical University and Shandong Academy of Medical Sciences, Tai'an, 271016, China.
Xiuli JingCollege of Chemistry and Pharmaceutical Engineering, Shandong First Medical University and Shandong Academy of Medical Sciences, Tai'an, 271016, China.
Chao MengCollege of Life sciences, Shandong First Medical University and Shandong Academy of Medical Sciences, Tai'an, 271016, China. cmeng@sdfmu.edu.cn.

Funding

National College Students Innovation and entrepreneurship training program 202310439062XNatural Science Foundation of Shandong Province ZR2022MH091Science and Technology Development Program of Tai'an 2021NS099
6 · The paper itself

Abstract

The mitochondrial whole genome of Phellinus igniarius was sequenced with the objective of examining the evolutionary relationships amongst related species. The entire mitochondrial genome was assembled using Illumina sequencing technology. The structural annotation and bioinformatics analysis were performed. The mitochondrial genome is a double-stranded circular DNA molecule with a total length of 172,449 bp and 86 genes, comprising 51 protein-coding genes (PCGs), 33 transport RNA (tRNA) genes, and 2 ribosomal RNA genes. Almost all protein coding genes utilise the ATG start codon, mainly TAA and TAG as the stop codon. 51 PCGs were predominantly affected by purification selection, among which giy-3, giy-6, rps3, lagli-3, lagli-5, lagli-11 and lagli-17 genes contained positive selection sites. Insertions, deletions and mutations were observed in the tRNA gene. With the exception of trnS2, which lacks dihydrouracil arm, the secondary structure of all tRNAs shows a typical clover structure. According to the phylogenetic study, Inonotus obliquus and the Phellius igniarius were closely related, belong to Hymenochaetaceae.

Indexed as

BasidiomycotaGenome, MitochondrialPhylogenyRNA, TransferWhole Genome SequencingRNA, RibosomalRNA, RibosomalRNA, Transfer

Identifiers

PMID39732982
PMCPMC11682317

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.