Evidence map›Paper›PMID 39731018›Full record

ArticleBMC genomics2024

LCRAnnotationsDB: a database of low complexity regions functional and structural annotations.

Joanna Ziemska-Legiecka, Patryk Jarnot, Sylwia Szymańska, Dagmara Błaszczyk, Alicja Staśczak, Hanna Langer-Macioł, Kinga Lucińska, Karolina Widzisz, Aleksandra Janas, Hanna Słowik and 3 more

Abstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Joanna Ziemska-LegieckaInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, 02-106, Poland. joannazl@ibb.waw.pl.
Patryk JarnotDepartment of Computer Networks and Systems, Silesian University of Technology, Gliwice, 44-100, Poland.
Sylwia SzymańskaDepartment of Computer Networks and Systems, Silesian University of Technology, Gliwice, 44-100, Poland.
Dagmara BłaszczykMalopolska Centre of Biotechnology, Jagiellonian University, Kraków, 30-387, Poland.
Alicja StaśczakBiotechnology Center, Silesian University of Technology, Gliwice, 44-100, Poland.
Hanna Langer-MaciołFaculty of Automatic Control, Electronics and Computer Science, Silesian University of Technology, Gliwice, 44-100, Poland.
Kinga LucińskaFaculty of Automatic Control, Electronics and Computer Science, Silesian University of Technology, Gliwice, 44-100, Poland.
Karolina WidziszDepartment of Graphics, Computer Vision and Digital Systems, Silesian University of Technology, Gliwice, 44-100, Poland.
Aleksandra JanasFaculty of Automatic Control, Electronics and Computer Science, Silesian University of Technology, Gliwice, 44-100, Poland.
Hanna SłowikFaculty of Automatic Control, Electronics and Computer Science, Silesian University of Technology, Gliwice, 44-100, Poland.
Wiktoria ŚliwińskaFaculty of Automatic Control, Electronics and Computer Science, Silesian University of Technology, Gliwice, 44-100, Poland.
Aleksandra Gruca *Department of Computer Networks and Systems, Silesian University of Technology, Gliwice, 44-100, Poland. aleksandra.gruca@polsl.pl.
Marcin Grynberg *Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, 02-106, Poland. greenb@ibb.waw.pl.

Funding

IBB PAS minigrant SBM - 08/07/2021Narodowym Centrum Nauki 2020/39/B/ST6/03447
6 · The paper itself

Abstract

Low Complexity Regions (LCRs) are segments of proteins with a low diversity of amino acid composition. These regions play important roles in proteins. However, annotations describing these functions are dispersed across databases and scientific literature. LCRAnnotationsDB aims to consolidate knowledge about LCRs and store relevant annotations in a single place. To unify redundant annotations, we assigned them categories based on similarity in function, protein structure, and biological process. Categories are organized hierarchically by linking them to Gene Ontology terms. The LCRAnnotationsDB database can be accessed at https://lcrannotdb.lcr-lab.org/ .

Indexed as

Databases, ProteinMolecular Sequence AnnotationComputational BiologyGene OntologyHumansProteinsProteinsAnnotationDatabaseFunctionIntegrationLCDLCRLow complexity regionsProteinStructure

Identifiers

PMID39731018
PMCPMC11674544

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.