Evidence map›Paper›PMID 39729274›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2025

A Method for the Separation of Phytophthora Oosporesfrom Soil for DNA-Based Detection.

Jade T T Palmer, Monica L Gerth

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Vertical distribution ofMicrobiology spectrum · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Jade T T PalmerSchool of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand.
Monica L GerthSchool of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand. monica.gerth@vuw.ac.nz.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Here, we present a protocol for the isolation and detection of Phytophthora oospores directly from soil samples. Our method incorporates a novel technique for isolating Phytophthora oospores using filter pouches and an improved DNA extraction procedure specifically designed for oospores. While we have primarily developed this protocol for detecting P. agathidicida oospores using end-point PCR, we believe these methods can be readily adapted for other Phytophthora species. Furthermore, the DNA extracted using this protocol is suitable as input for other DNA-based detection methods.

Indexed as

PhytophthoraSoil MicrobiologyPolymerase Chain ReactionDetectionDNAFiltrationOosporesPCRPhytophthora agathidicidaSoil

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.