Evidence map›Paper›PMID 39729237›Full record

ArticleIn vitro cellular & developmental biology. Animal2025

Expression, prognosis, immunological infiltration, and DNA methylation of members of the SFRP gene family in colorectal cancer: a comparative bioinformatic and experimental analysis.

Haicheng Yang, Zhuo Han, Ying Yang, Shuai Zhou, Bo Zhang, Jiaxing He, Xianli He, Nan Wang

Abstract readComparative Study
In one paragraph

Article in In vitro cellular & developmental biology. Animal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Haicheng Yang *Department of General Surgery, Tangdu Hospital, The Air Force Medical University, Xi'an, 710038, China.
Zhuo Han *Department of General Surgery, Tangdu Hospital, The Air Force Medical University, Xi'an, 710038, China.
Ying YangDepartment of General Surgery, Tangdu Hospital, The Air Force Medical University, Xi'an, 710038, China.
Shuai ZhouDepartment of General Surgery, Tangdu Hospital, The Air Force Medical University, Xi'an, 710038, China.
Bo ZhangDepartment of General Surgery, Tangdu Hospital, The Air Force Medical University, Xi'an, 710038, China.
Jiaxing HeDepartment of General Surgery, Tangdu Hospital, The Air Force Medical University, Xi'an, 710038, China.
Xianli HeDepartment of General Surgery, Tangdu Hospital, The Air Force Medical University, Xi'an, 710038, China.
Nan WangDepartment of General Surgery, Tangdu Hospital, The Air Force Medical University, Xi'an, 710038, China. wangnanafmu@163.com.

Funding

National Natural Science Foundation of China 82072722
6 · The paper itself

Abstract

This study aimed to investigate the expression, prognostic significance, methylation, and immune invasion levels of secreted frizzled-related proteins (SFRP1-5) in colorectal cancer (CRC). Additionally, the relationship between SFRP1/2 methylation and immune infiltration in CRC was explored. The expression of SFRP1-5 was analyzed using several databases, including GEO, TCGA, TIMER, STRING, and GEPIA. Molecular interactions with SFRPs were examined via Cytoscape software. Gene Ontology (GO) and Kyoto Encyclopedia of Genes, and Genomes (KEGG) pathway analyses were conducted using the DAVID database. Methylation levels of SFRP1/2 in CRC were assessed through methylation-specific PCR (MSP) and bisulfite sequencing PCR (BSP) experiments. Apoptosis and proliferation in CRC cells following the knockdown of SFRP1/2 expression were evaluated using flow cytometry and CCK-8 assays. The TISIDB database was used to analyze the relationship between SFRP1/2 methylation levels and immune infiltration. The expression of SFRP1, SFRP2, and SFRP5 was significantly lower in CRC patients, while SFRP4 expression was higher compared to that in healthy individuals. Elevated mRNA expression of SFRP2 was significantly associated with improved overall survival (OS), disease-specific survival, and progression-free intervals. SFRP1/2 expression was also linked to immune invasion, with higher levels correlating with increased immune infiltration. Both SFRP1 and SFRP2 showed hypermethylation in CRC. Knockdown of SFRP1/2 expression resulted in increased proliferation of CRC cells, and their methylation levels were inversely correlated with immune cell presence. The expression, methylation, and immune cell infiltration patterns of the SFRP family in CRC differed markedly from those in healthy individuals. These findings suggest that SFRPs may serve as potential therapeutic targets and key genes associated with immune cell infiltration in CRC.

Indexed as

Colorectal NeoplasmsComputational BiologyDNA MethylationIntercellular Signaling Peptides and ProteinsMembrane ProteinsApoptosisCell Line, TumorCell ProliferationFemaleGene Expression Regulation, NeoplasticHumansMaleMiddle AgedPrognosisSecreted Frizzled-Related ProteinsIntercellular Signaling Peptides and ProteinsMembrane ProteinsSecreted Frizzled-Related ProteinsSFRP1 protein, humanSFRP2 protein, humanColorectal cancerDNA methylationImmune infiltrationSFRP

Identifiers

PMID39729237
PMCPMC11865182

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.