Evidence map›Paper›PMID 39724211›Full record

ArticlePloS one2024

Development of a diagnostic multivariable prediction model of a positive SARS-CoV-2 RT-PCR result in healthcare workers with suspected SARS-CoV-2 infection in hospital settings.

Sandra Liliana Valderrama-Beltrán, Juliana Cuervo-Rojas, Martín Rondón, Juan Sebastián Montealegre-Diaz, Juan David Vera, Samuel Martinez-Vernaza, Alejandra Bonilla, Camilo Molineros, Viviana Fierro, Atilio Moreno and 3 more

Abstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Sandra Liliana Valderrama-BeltránFaculty of Medicine, Department of Clinical Epidemiology and Biostatistics, PhD Program in Clinical Epidemiology, Pontificia Universidad Javeriana, Bogotá, Colombia.ORCID 0000-0003-1833-1599
Juliana Cuervo-RojasFaculty of Medicine, Department of Clinical Epidemiology and Biostatistics, Pontificia Universidad Javeriana, Bogotá, Colombia.ORCID 0000-0001-8888-9411
Martín RondónFaculty of Medicine, Department of Clinical Epidemiology and Biostatistics, Pontificia Universidad Javeriana, Bogotá, Colombia.
Juan Sebastián Montealegre-DiazFaculty of Medicine, Department of Internal Medicine, Division of Infectious Diseases, Pontificia Universidad Javeriana, Hospital Universitario San Ignacio, Infectious Diseases Research Group, Bogotá, Colombia.
Juan David VeraFaculty of Medicine, Department of Internal Medicine, Division of Infectious Diseases, Pontificia Universidad Javeriana, Hospital Universitario San Ignacio, Infectious Diseases Research Group, Bogotá, Colombia.
Samuel Martinez-VernazaFaculty of Medicine, Department of Internal Medicine, Division of Infectious Diseases, Pontificia Universidad Javeriana, Hospital Universitario San Ignacio, Infectious Diseases Research Group, Bogotá, Colombia.
Alejandra BonillaFaculty of Medicine, Department of Internal Medicine, Division of Infectious Diseases, Pontificia Universidad Javeriana, Hospital Universitario San Ignacio, Infectious Diseases Research Group, Bogotá, Colombia.
Camilo MolinerosFaculty of Medicine, Pontificia Universidad Javeriana, Hospital Universitario San Ignacio, Bogotá, Colombia.
Viviana FierroHuman Resources Office, Hospital Universitario San Ignacio, Bogotá, Colombia.
Atilio MorenoFaculty of Medicine, Department of Internal Medicine, Division of Emergency, Pontificia Universidad Javeriana, Hospital Universitario San Ignacio, Bogotá, Colombia.
Leidy VillalobosFaculty of Medicine, Department of Internal Medicine, Division of Emergency, Pontificia Universidad Javeriana, Hospital Universitario San Ignacio, Bogotá, Colombia.
Beatriz ArizaClinical Laboratory, Clinical Laboratory Science Research Group, Hospital Universitario San Ignacio, Bogotá, Colombia.ORCID 0000-0001-8650-5285
Carlos Álvarez-MorenoClínica Colsanitas and Facultad de Medicina, Universidad Nacional de Colombia, Bogotá, Colombia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDespite declining COVID-19 incidence, healthcare workers (HCWs) still face an elevated risk of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection. We developed a diagnostic multivariate model to predict positive reverse transcription polymerase chain reaction (RT-PCR) results in HCWs with suspected SARS-CoV-2 infection.

methodsWe conducted a cross-sectional study on episodes involving suspected SARS-CoV-2 symptoms or close contact among HCWs in Bogotá, Colombia. Potential predictors were chosen based on clinical relevance, expert knowledge, and literature review. Logistic regression was used, and the best model was selected by evaluating model fit with Akaike Information Criterion (AIC), deviance, and maximum likelihood.

resultsThe study included 2498 episodes occurring between March 6, 2020, to February 2, 2022. The selected variables were age, socioeconomic status, occupation, service, symptoms (fever, cough, fatigue/weakness, diarrhea, anosmia or dysgeusia), asthma, history of SARS-CoV-2, vaccination status, and population-level RT-PCR positivity. The model achieved an AUC of 0.79 (95% CI 0.77-0.81), with 93% specificity, 36% sensitivity, and satisfactory calibration.

conclusionsWe present an innovative diagnostic prediction model that as a special feature includes a variable that represents SARS-CoV-2 epidemiological situation. Given its performance, we suggest using the model differently based on the level of viral circulation in the population. In low SARS-CoV-2 circulation periods, the model could serve as a replacement diagnostic test to classify HCWs as infected or not, potentially reducing the need for RT-PCR. Conversely, in high viral circulation periods, the model could be used as a triage test due to its high specificity. If the model predicts a high probability of a positive RT-PCR result, the HCW may be considered infected, and no further testing is performed. If the model indicates a low probability, the HCW should undergo a COVID-19 test. In resource-limited settings, this model can help prioritize testing and reduce expenses.

Indexed as

COVID-19Health PersonnelSARS-CoV-2AdultColombiaCOVID-19 Nucleic Acid TestingCross-Sectional StudiesFemaleHospitalsHumansLogistic ModelsMaleMiddle AgedReverse Transcriptase Polymerase Chain Reaction

Identifiers

PMID39724211
PMCPMC11670996

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.