Evidence map›Paper›PMID 39722556›Full record

ArticlePlant, cell & environment2025

Histone Modification-Dependent Transcriptional Regulation of Defence Genes in Early Response of Arabidopsis to Spodoptera litura Attack.

Ahmed Yusuf, Kota Wakaya, Takuya Sakamoto, Takuya Uemura, Koudai Okamura, Abdelaziz Ramadan, Akira Nozawa, Takamasa Suzuki, Yayoi Inui, Sachihiro Matsunaga and 2 more

Abstract read
In one paragraph

Article in Plant, cell & environment, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Ahmed YusufDepartment of Biological Science and Technology, Faculty of Advanced Engineering, Tokyo University of Science, Tokyo, Japan.ORCID 0009-0004-2468-319X
Kota WakayaDepartment of Biological Science and Technology, Faculty of Advanced Engineering, Tokyo University of Science, Tokyo, Japan.
Takuya SakamotoDepartment of Science, Faculty of Science, Kanagawa University, Yokohama, Japan.
Takuya UemuraDepartment of Biological Science and Technology, Faculty of Advanced Engineering, Tokyo University of Science, Tokyo, Japan.
Koudai OkamuraDepartment of Biological Science and Technology, Faculty of Advanced Engineering, Tokyo University of Science, Tokyo, Japan.
Abdelaziz RamadanDepartment of Biological Science and Technology, Faculty of Advanced Engineering, Tokyo University of Science, Tokyo, Japan.
Akira NozawaProteo-Science Center, Ehime University, Matsuyama, Japan.
Takamasa SuzukiCollege of Bioscience and Biotechnology, Chubu University, Kasugai, Japan.
Yayoi InuiDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan.
Sachihiro MatsunagaDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan.
Tatsuya SawasakiProteo-Science Center, Ehime University, Matsuyama, Japan.
Gen-Ichiro ArimuraDepartment of Biological Science and Technology, Faculty of Advanced Engineering, Tokyo University of Science, Tokyo, Japan.ORCID 0000-0002-3371-0469

Funding

This work was partially funded by the Egypt-Japan Education Partnership (EJEP) through a collaborative arrangement between the Japan International Cooperation Agency (JICA) and the Egyptian Ministry of Higher Education (MOHE) to A.Y., and by the Japan Society for the Promotion of Science (JSPS) KAKENHI (20H02951, 24K01723, and 24K18197) and Tokyo University of Science Research Grants to G.A. and T.U.
6 · The paper itself

Abstract

Histone modification is a cellular process for transcriptional regulation. In herbivore-damaged plants, activation of genes involved in defence responses is required for antiherbivore properties, but little is known about how the chromatin remodelling system is involved. In Arabidopsis (Arabidopsis thaliana) plants responding to Spodoptera litura larvae, HAC1 and HDA6, a histone acetyltransferase and a histone deacetylase, respectively, were found here to be involved in histone H3 (Lys9; H3K9) acetylation/deacetylation at the promoter region of the plant defensin gene PDF1.2 and the gene body of ethylene response factor 13 (ERF13) as early as 2 h after the onset of herbivore attack. The H3K9 acetylation was responsible for the robust upregulation of PDF1.2 later, at 24 h, and ERF13 even earlier, at 1 h. TOPLESS (TPL) and TOPLESS-related (TPR) corepressors interacted with HDA6 to deacetylate H3K9 at PDF1.2 and ERF13, while negatively regulating the expression of PDF1.2 but not ERF13. Furthermore, TPL also interacted with ERF13, resulting in ERF13-mediated regulation of PDF1.2. Taken together, these data suggest a model of promoter-restricted, TPL/TPR-directed histone deacetylation and transcription factor repression in healthy Arabidopsis plants for the feedback regulation of the antiherbivore response.

Indexed as

ArabidopsisGene Expression Regulation, PlantHistone CodeHistonesPlant Defense Against HerbivorySpodopteraAcetylationAnimalsArabidopsis ProteinsDefensinsHerbivoryHistone AcetyltransferasesHistone DeacetylasesLarvaPromoter Regions, GeneticArabidopsis ProteinsDefensinsHistone AcetyltransferasesHistone DeacetylasesHistonesArabidopsis thalianahistone acetyltransferase of the CBP family 1 (HAC1)histone deacetylase 6 (HDA6)Spodoptera lituraTOPLESS (TPL) and TOPLESS‐related (TPR) corepressors

Identifiers

PMID39722556
PMCPMC11963488

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.