Evidence map›Paper›PMID 39722539›Full record

ArticleGut microbes2025

Martha A Zepeda-Rivera, Yannick Eisele, Alexander Baryiames, Hanrui Wu, Claudia Mengoni, Gianmarco Piccinno, Elsa F McMahon, Kaitlyn D LaCourse, Dakota S Jones, Hans Hauner and 5 more

Abstract read
In one paragraph

Article in Gut microbes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Gut microbes · 2025
    Article
  5. Review
4 · The record

Corrections and comments

  • Update of
    2024
5 · Who and what money

Authors and funding

15 authors.

Martha A Zepeda-RiveraVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, WA, USA.ORCID 0000-0002-2408-8719
Yannick EiseleSchool of Medicine and Health, Technical University of Munich, Munich, Germany.
Alexander BaryiamesHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
Hanrui WuHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
Claudia MengoniDepartment of Computational, Cellular and Integrative Biology, University of Trento, Trento, Italy.
Gianmarco PiccinnoDepartment of Computational, Cellular and Integrative Biology, University of Trento, Trento, Italy.
Elsa F McMahonVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, WA, USA.
Kaitlyn D LaCourseHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.
Dakota S JonesVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, WA, USA.
Hans HaunerInstitute of Nutritional Medicine, School of Medicine and Health, Technical University of Munich, Munich, Germany.
Samuel S MinotData Core, Shared Resources, Fred Hutchinson Cancer Center, Seattle, Washington, USA.
Nicola SegataDepartment of Computational, Cellular and Integrative Biology, University of Trento, Trento, Italy.
Floyd E DewhirstDepartment of Microbiology, ADA Forsyth Institute, Cambridge, MA, USA.
Christopher D JohnstonVaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, WA, USA.ORCID 0000-0002-6765-2383
Susan BullmanHuman Biology Division, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-7713-0810

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
The SyngenicDNA and μPOET Platform: Overcoming Innate Barriers to Genetic Engineering in Bacteria.R01DE027850 · NIDCR · FRED HUTCHINSON CANCER RESEARCH CENTER · PI JOHNSTON, CHRISTOPHER D · 2017 to 2021
$4.9M
High-Performance Compute Cluster for Comprehensive Cancer and Infectious Diseases ResearchS10OD028685 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BRADLEY, PHILIP · 2020 to 2020
$2.0M
NCI NIH HHS P30 CA015704NCI NIH HHS R00 CA229984-03NIDCR NIH HHS R01 DE027850NIH HHS S10 OD028685
6 · The paper itself

Abstract

Cancerous tissue is a largely unexplored microbial niche that provides a unique environment for the colonization and growth of specific bacterial communities, and with it, the opportunity to identify novel bacterial species. Here, we report distinct features of a novel

Indexed as

Colonic NeoplasmsEpithelial CellsFusobacteriumInterleukin-8PhylogenyAdenocarcinomaBacterial AdhesionColonFecesGastrointestinal MicrobiomeGenome, BacterialHumansRNA, Ribosomal, 16SCXCL8 protein, humanInterleukin-8RNA, Ribosomal, 16Scolorectal cancercomparative genomicsFusobacteriumintestinal microbiotanovel speciespangenome

Identifiers

PMID39722539
PMCPMC12931714

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.