Evidence map›Paper›PMID 39720924›Full record

ReviewNucleus (Austin, Tex.)2025

Closing the loops: chromatin loop dynamics after DNA damage.

Pierre-Alexandre Vidi, Jing Liu, Keith Bonin, Kerry Bloom

Abstract readReview
In one paragraph

Review in Nucleus (Austin, Tex.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Pierre-Alexandre VidiLaboratoire InGenO, Institut de Cancérologie de l'Ouest, Angers, France.ORCID 0000-0002-9117-8896
Jing LiuDepartment of Physics and Astronomy, Purdue University, West Lafayette, IN, USA.ORCID 0000-0002-4912-4560
Keith BoninDepartment of Physics, Wake Forest University, Winston-Salem, NC, USA.ORCID 0000-0002-7594-823X
Kerry BloomDepartment of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID 0000-0002-3457-004X

Funding

Structure and Function of a Eukaryotic CentromereR01GM032238 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BLOOM, KERRY S · 1985 to 2025
$6.2M
Chromatin mobility in response to DNA damageU01CA214282 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI BONIN, KEITH D, PARDEE, TIMOTHY SEBASTIAN · 2018 to 2022
$3.0M
Monitoring the three-dimensional motion of chromatin at single molecule resolutionR35GM147412 · NIGMS · PURDUE UNIVERSITY · PI Jing Liu · 2022 to 2026
$1.8M
NCI NIH HHS U01 CA214282NIGMS NIH HHS R01 GM032238NIGMS NIH HHS R35 GM147412
6 · The paper itself

Abstract

Chromatin is a dynamic polymer in constant motion. These motions are heterogeneous between cells and within individual cell nuclei and are profoundly altered in response to DNA damage. The shifts in chromatin motions following genomic insults depend on the temporal and physical scales considered. They are also distinct in damaged and undamaged regions. In this review, we emphasize the role of chromatin tethering and loop formation in chromatin dynamics, with the view that pulsing loops are key contributors to chromatin motions. Chromatin tethers likely mediate micron-scale chromatin coherence predicted by polymer models and measured experimentally, and we propose that remodeling of the tethers in response to DNA breaks enables uncoupling of damaged and undamaged chromatin regions.

Indexed as

ChromatinDNA DamageAnimalsDNAHumansChromatinDNAChromatin coherencechromatin motionscohesinDNA damageloopstethers

Identifiers

PMID39720924
PMCPMC12897541

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.