Evidence map›Paper›PMID 39718773›Full record

ArticleMolecular biology of the cell2025

Ubiquitin-mediated recruitment of the ATG9A-ATG2 lipid transfer complex drives clearance of phosphorylated p62 aggregates.

David G Broadbent, Colten M McEwan, Dasun Jayatunge, Emily G Kaminsky, Tsz-Min Tsang, Daniel M Poole, Bradley C Naylor, John C Price, Jens C Schmidt, Josh L Andersen

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

David G BroadbentInstitute for Quantitative Health Sciences and Engineering, Michigan State University, East Lansing, MI 48824.
Colten M McEwanDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84602.
Dasun JayatungeDepartment of Oncological Sciences and Huntsman Cancer Institute, University of Utah School of Medicine, Salt Lake City, UT 84112.
Emily G KaminskyInstitute for Quantitative Health Sciences and Engineering, Michigan State University, East Lansing, MI 48824.
Tsz-Min TsangDepartment of Oncological Sciences and Huntsman Cancer Institute, University of Utah School of Medicine, Salt Lake City, UT 84112.
Daniel M PooleDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84602.
Bradley C NaylorDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84602.
John C PriceDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84602.
Jens C SchmidtInstitute for Quantitative Health Sciences and Engineering, Michigan State University, East Lansing, MI 48824.
Josh L AndersenDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84602.ORCID 0000-0003-2071-744X

Funding

Biochemical Consequences of Regiospecific Metabolic Bias in the BrainR01AG066874 · NIA · BRIGHAM YOUNG UNIVERSITY · PI PRICE, JOHN C. · 2020 to 2024
$3.0M
Single-molecule Analysis of the DNA Damage Response in Living CellsDP2GM142307 · NIGMS · MICHIGAN STATE UNIVERSITY · PI SCHMIDT, JENS CHRISTOPHER · 2020 to 2020
$2.1M
The Regulation and Function of the Ubiquitin-Sensing Kinase TNK1R01GM147310 · NIGMS · UNIVERSITY OF UTAH · PI ANDERSEN, JOSHUA LYON · 2022 to 2024
$957k
PTM-driven mechanisms of cell signalingR35GM158333 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Joshua Lyon Andersen · 2025 to 2026
$847k
NIA NIH HHS R01 AG066874NIGMS NIH HHS DP2 GM142307NIGMS NIH HHS R01 GM147310NIGMS NIH HHS R35 GM158333
6 · The paper itself

Abstract

Autophagy is an essential cellular recycling process that maintains protein and organelle homeostasis. ATG9A vesicle recruitment is a critical early step in autophagy to initiate autophagosome biogenesis. The mechanisms of ATG9A vesicle recruitment are best understood in the context of starvation-induced nonselective autophagy, whereas less is known about the signals driving ATG9A vesicle recruitment to autophagy initiation sites in the absence of nutrient stress. Here we demonstrate that loss of ATG9A, or the lipid transfer protein ATG2, leads to the accumulation of phosphorylated p62 aggregates in nutrient replete conditions. Furthermore, we show that p62 degradation requires the lipid scramblase activity of ATG9A. Last, we present evidence that polyubiquitin is an essential signal that recruits ATG9A and mediates autophagy foci assembly in nutrient replete cells. Together, our data support a ubiquitin-driven model of ATG9A recruitment and autophagosome formation during basal autophagy.

Indexed as

Autophagy-Related ProteinsMembrane ProteinsUbiquitinVesicular Transport ProteinsAutophagosomesAutophagyPhosphorylationPolyubiquitinSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequestosome-1 ProteinATG2 protein, S cerevisiaeAutophagy-Related ProteinsMembrane ProteinsPolyubiquitinSaccharomyces cerevisiae ProteinsSequestosome-1 ProteinUbiquitinVesicular Transport Proteins

Identifiers

PMID39718773
PMCPMC11809316

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.