Evidence map›Paper›PMID 39718467›Full record

ArticleJournal of computational chemistry2025

A Polarizable CASSCF/MM Approach Using the Interface Between OpenMMPol Library and Cfour.

Tommaso Nottoli, Mattia Bondanza, Filippo Lipparini, Benedetta Mennucci

Abstract read
In one paragraph

Article in Journal of computational chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Tommaso NottoliDipartimento di Chimica e Chimica Industriale, Università di Pisa, Pisa, Italy.
Mattia BondanzaDipartimento di Chimica e Chimica Industriale, Università di Pisa, Pisa, Italy.
Filippo LippariniDipartimento di Chimica e Chimica Industriale, Università di Pisa, Pisa, Italy.
Benedetta MennucciDipartimento di Chimica e Chimica Industriale, Università di Pisa, Pisa, Italy.ORCID https://orcid.org/0000-0002-4394-0129

Funding

ICSC-Centro Nazionale di Ricerca in High-Performance Computing, Big Data, and Quantum Computing, funded by the European UnionNextGenerationEU-PNRR, Missione 4 Componente 2 Investimento 1.4.
6 · The paper itself

Abstract

We present a polarizable embedding quantum mechanics/molecular mechanics (QM/MM) framework for ground- and excited-state Complete Active Space Self-Consistent Field (CASSCF) calculations on molecules within complex environments, such as biological systems. These environments are modeled using the AMOEBA polarizable force field. This approach is implemented by integrating the OpenMMPol library with the CFour quantum chemistry software suite. The implementation supports both single-point energy evaluations and geometry optimizations, facilitated by the availability of analytical gradients. We demonstrate the methodology by applying it to two distinct photoreceptors, exploring the impact of the protein environment on the structural and photophysical properties of their embedded chromophores.

Indexed as

AMOEBACASSCFgradientpolarizable

Identifiers

PMID39718467
PMCPMC11668234

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.