Evidence map›Paper›PMID 39716214›Full record

ArticleCritical care (London, England)2024

Multiomic molecular patterns of lipid dysregulation in a subphenotype of sepsis with higher shock incidence and mortality.

Beulah Augustin, Dongyuan Wu, Lauren Page Black, Andrew Bertrand, Dawoud Sulaiman, Charlotte Hopson, Vinitha Jacob, Jordan A Shavit, Daniel A Hofmaenner, Guillaume Labilloy and 6 more

Abstract read
In one paragraph

Article in Critical care (London, England), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. [Nan fang yi ke da xue xue bao = Journal of Southern Medical University
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Beulah Augustin *Department of Emergency Medicine, University of Florida College of Medicine, 1329 SW 16thStreet, Gainesville, FL, 32610, USA.
Dongyuan Wu *Department of Biostatistics, University of Florida, Gainesville, FL, USA.
Lauren Page BlackDepartment of Emergency Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Andrew BertrandDepartment of Emergency Medicine, University of Florida College of Medicine, 1329 SW 16thStreet, Gainesville, FL, 32610, USA.
Dawoud SulaimanDivision of Cardiology, Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, 90095, USA.
Charlotte HopsonDepartment of Emergency Medicine, University of Florida College of Medicine, 1329 SW 16thStreet, Gainesville, FL, 32610, USA.
Vinitha JacobDepartment of Emergency Medicine, University of Michigan Medical School, Ann Arbor, MI, USA.
Jordan A ShavitDepartment of Pediatrics, University of Michigan Medical School, Ann Arbor, MI, USA.
Daniel A HofmaennerInstitute of Intensive Care Medicine, University Hospital Zurich, Raemistrasse 100, CH-8091, Zurich, Switzerland.
Guillaume LabilloyUF Health Jacksonville Center for Data Solutions, Jacksonville, FL, USA.
Leslie SmithComputer and Information Science Engineering, College of Engineering, University of Florida, Gainesville, FL, USA.
Emilio CagmatDepartment of Emergency Medicine, University of Florida College of Medicine, 1329 SW 16thStreet, Gainesville, FL, 32610, USA.
Kiley GraimComputer and Information Science Engineering, College of Engineering, University of Florida, Gainesville, FL, USA.
Susmita DattaDepartment of Biostatistics, University of Florida, Gainesville, FL, USA.
Srinivasa T Reddy *Division of Cardiology, Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, 90095, USA.
Faheem W Guirgis *Department of Emergency Medicine, University of Florida College of Medicine, 1329 SW 16thStreet, Gainesville, FL, 32610, USA. fguirgis@ufl.edu.

Funding

Genetic and therapeutic studies of hemostatic and thrombotic disorders using zebrafishR35HL150784 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Jordan A. Shavit · 2020 to 2026
$5.4M
The Role and Mechanisms of Lipid and Lipoprotein Dysregulation in SepsisR01GM133815 · NIGMS · UNIVERSITY OF FLORIDA · PI GUIRGIS, FAHEEM W · 2020 to 2024
$2.5M
Role of intestinal inflammation in oxidized lipid induced pulmonary hypertensionR01HL162124 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI EGHBALI, MANSOUREH, REDDY, SRINIVASA T. · 2022 to 2025
$2.4M
K12: Career Development in Emergency Critical Care ResearchK12HL133304 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NEUMAR, ROBERT W., PINSKY, DAVID J. · 2016 to 2020
$2.2M
Leveraging Mammalian Cancers, Platinum-Quality Genome Assemblies, and Large-Scale Data to Identify Mechanisms of Rare Human CancersR01CA265907 · NCI · UNIVERSITY OF FLORIDA · PI Kiley Graim · 2022 to 2026
$1.6M
Supplement to Informing the Emergency Care of Septic Shock Patients A Novel Application of Data-Driven AnalyticsK23GM144802 · NIGMS · UNIVERSITY OF FLORIDA · PI BLACK, LAUREN PAGE · 2021 to 2025
$770k
The Role of DHCR7 in EndotoxemiaK08GM151392 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Vinitha Jacob · 2024 to 2026
$624k
NCI NIH HHS R01 CA265907NCI NIH HHS R01CA265907NHLBI NIH HHS K12 HL133304NHLBI NIH HHS K12HL133304NHLBI NIH HHS R01 HL162124NHLBI NIH HHS R01HL162124NHLBI NIH HHS R35 HL150784NHLBI NIH HHS R35HL150784NIGMS NIH HHS K08 GM151392NIGMS NIH HHS K08GM151392NIGMS NIH HHS K23 GM144802NIGMS NIH HHS K23GM144802NIGMS NIH HHS R01 GM133815NIGMS NIH HHS R01GM133815
6 · The paper itself

Abstract

backgroundLipids play a critical role in defense against sepsis. We sought to investigate gene expression and lipidomic patterns of lipid dysregulation in sepsis.

methodsData from four adult sepsis studies were analyzed and findings were investigated in two external datasets. Previously characterized lipid dysregulation subphenotypes of hypolipoprotein (HYPO; low lipoproteins, increased mortality) and normolipoprotein (NORMO; higher lipoproteins, lower mortality) were studied. Leukocytes collected within 24 h of sepsis underwent RNA sequencing (RNAseq) and shotgun plasma lipidomics was performed.

resultsOf 288 included patients, 43% were HYPO and 57% were NORMO. HYPO patients exhibited higher median SOFA scores (9 vs 5, p = < 0.001), vasopressor use (67% vs 34%, p = < 0.001), and 28-day mortality (30% vs 16%, p = 0.004). Leukocyte RNAseq identified seven upregulated lipid metabolism genes in HYPO (PCSK9, DHCR7, LDLR, ALOX5, PLTP, FDFT1, and MSMO1) vs. NORMO patients. Lipidomics revealed lower cholesterol esters (CE, adjusted p = < 0.001), lysophosphatidylcholines (LPC, adjusted p = 0.001), and sphingomyelins (SM, adjusted p = < 0.001) in HYPO patients. In HYPO patients, DHCR7 expression strongly correlated with reductions in CE, LPC, and SM (p < 0.01), while PCSK9, MSMO1, DHCR7, PLTP, and LDLR upregulation were correlated with low LPC (p < 0.05). DHCR7, ALOX5, and LDLR correlated with reductions in SM (p < 0.05). Mortality and phenotype comparisons in two external datasets (N = 824 combined patients) corroborated six of the seven upregulated lipid genes (PCSK9, DHCR7, ALOX5, PLTP, LDLR, and MSMO1).

conclusionWe identified a genetic lipid dysregulation signature characterized by seven lipid metabolism genes. Five genes in HYPO sepsis patients most strongly correlated with low CE, LPC, and SMs that mediate cholesterol storage and innate immunity.

Indexed as

SepsisAgedFemaleHumansIncidenceLipid MetabolismLipidomicsMaleMiddle AgedPhenotypeCholesterolLipidsPhenotypingSepsis

Identifiers

PMID39716214
PMCPMC11667828

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.