Evidence map›Paper›PMID 39716050›Full record

ArticleBMC microbiology2024

New insights into the efficient secretion of foreign protein in Bacillus subtilis via Ribo-seq and RNA-seq integrative analyses.

Huabiao Miao, Xia Xiang, Ling Cheng, Qian Wu, Zunxi Huang

Abstract read
In one paragraph

Article in BMC microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Impact of expression systems on the transcriptome ofApplied and environmental microbiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Huabiao Miao *School of Life Science, Yunnan Normal University, Kunming, 650500, China.
Xia Xiang *School of Life Science, Yunnan Normal University, Kunming, 650500, China.
Ling ChengGuangzhou Genedenovo Biotechnology Company Limited, Guangzhou, 510000, China.
Qian WuSchool of Life Science, Yunnan Normal University, Kunming, 650500, China.
Zunxi HuangSchool of Life Science, Yunnan Normal University, Kunming, 650500, China. huangzunxi@163.com.

Funding

National Natural Science Foundation of China 32260015
6 · The paper itself

Abstract

backgroundAs an important prokaryotic model organism, Bacillus subtilis has been widely used in the industrial production of a variety of target products. The efficient secretion of target products has always been the main purpose of industrial microbial technology. The modification of gene regulatory networks is an important technical means to construct a factory of microbial cells that efficiently secretes target products. However, the regulatory network of the efficient expression of foreign genes in B. subtilis has not been studied at the translation level.

resultsIn this study, Ribo-seq and RNA-seq technology were used to study the changes in differentially expressed genes during the efficient secretion of the protease PB92 by B. subtilis WB600, and the results revealed the gene regulatory network related to efficient secretion of foreign protein. The results revealed that the correlation between the differentially expressed genes of B. subtilis at the transcription and translation levels was only 0.5354. Forty-one common (transcription and translation) and 436 unique (translation) key differential gene sets that may be related to the efficient secretion of foreign proteins were revealed. KEGG enrichment analysis of these key gene sets revealed that they were involved mainly in the cell motility and central metabolic regulatory network of B. subtilis.

conclusionOur study provides important guidance for the construction of cell factories and metabolic networks for the efficient secretion of target products by B. subtilis.

Indexed as

Bacillus subtilisBacterial ProteinsGene Expression Regulation, BacterialGene Regulatory NetworksGene Expression ProfilingRibosome ProfilingRNA-SeqSequence Analysis, RNABacterial ProteinsBacillus subtilisForeign proteinGene regulatory networksRibosome profilingRNA sequencing

Identifiers

PMID39716050
PMCPMC11665238

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.