Evidence map›Paper›PMID 39715451›Full record

ArticleGenome biology and evolution2025

Investigating the Impact of Whole-Genome Duplication on Transposable Element Evolution in Teleost Fishes.

Rittika Mallik, Dustin J Wcisel, Thomas J Near, Jeffrey A Yoder, Alex Dornburg

Abstract read
In one paragraph

Article in Genome biology and evolution, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Bony fish genomes: Status and gaps.Journal of fish biology · 2026
    Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Rittika MallikDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC, USA.ORCID 0000-0002-6594-1835
Dustin J WciselDepartment of Molecular Biomedical Sciences, North Carolina State University, Raleigh, NC, USA.ORCID 0000-0001-6858-643X
Thomas J NearDepartment of Ecology & Evolutionary Biology and Peabody Museum, Yale University, New Haven, CT, USA.ORCID 0000-0002-7398-6670
Jeffrey A YoderDepartment of Molecular Biomedical Sciences, North Carolina State University, Raleigh, NC, USA.ORCID 0000-0002-6083-1311
Alex DornburgDepartment of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC, USA.ORCID 0000-0003-0863-2283

Funding

National Science Foundation IOS1755242
6 · The paper itself

Abstract

Transposable elements (TEs) can make up more than 50% of any given vertebrate's genome, with substantial variability in TE composition among lineages. TE variation is often linked to changes in gene regulation, genome size, and speciation. However, the role that genome duplication events have played in generating abrupt shifts in the composition of the mobilome over macroevolutionary timescales remains unclear. We investigated the degree to which the teleost genome duplication (TGD) shaped the diversification trajectory of the teleost mobilome. We integrate a new high coverage genome of Polypterus bichir with data from over 100 publicly available actinopterygian genomes to assess the macroevolutionary implications of genome duplication events on TE evolution in teleosts. Our results provide no evidence for a substantial shift in mobilome composition following the TGD event. Instead, the diversity of the teleost mobilome appears to have been shaped by a history of lineage-specific shifts in composition that are not correlated with commonly evoked drivers of diversification such as body size, water column usage, or latitude. Collectively, these results provide additional evidence for an emerging perspective that TGD did not catalyze bursts of diversification and innovation in the actinopterygian mobilome.

Indexed as

DNA Transposable ElementsEvolution, MolecularFishesGene DuplicationGenomeAnimalsPhylogenyDNA Transposable ElementsActinopterygiiliving fossilTeleosteiteleost genome duplicationtransposable elements

Identifiers

PMID39715451
PMCPMC11785729

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.