Evidence map›Paper›PMID 39715301›Full record

ArticleCancer discovery2024

Temporal Genomic Analysis of Homogeneous Tumor Models Reveals Key Regulators of Immune Evasion in Melanoma.

Sapir Cohen Shvefel, Joy A Pai, Yingying Cao, Lipika R Pal, Osnat Bartok, Ronen Levy, Marie J Zemanek, Chen Weller, Ella Herzog, Winnie Yao and 28 more

Abstract read
In one paragraph

Article in Cancer discovery, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors.

Sapir Cohen Shvefel *Weizmann Institute of Science, Rehovot, Israel.ORCID 0009-0005-0810-4466
Joy A Pai *Stanford University, Stanford, CA, United States.ORCID 0009-0000-3529-6671
Yingying CaoNCI, NIH, Bethesda, MD, United States.ORCID 0009-0002-0604-5894
Lipika R PalNational Cancer Institute, Bethesda, MD, United States.ORCID 0000-0002-3390-110X
Osnat BartokWeizmann Institute of Science, Rehovot, Israel.ORCID 0009-0005-3306-1007
Ronen LevyWeizmann Institute of Science, Rehovot, Israel.ORCID 0000-0002-9574-2132
Marie J ZemanekWeizmann Institute of Science, Rehovot, Israel.ORCID 0009-0000-5401-9100
Chen WellerWeizmann Institute of Science, Rehovot, Israel.ORCID 0009-0004-7772-7475
Ella HerzogWeizmann Institute of Science, Israel.ORCID 0009-0006-1670-0257
Winnie YaoStanford University, Stanford, CA, United States.ORCID 0000-0003-1159-5153
Kamir J Hiam-GalvezUniversity of California, San Francisco, San Francisco, CA, United States.ORCID 0000-0002-1956-0257
Kuoyuan ChengMerck & Co., Inc, United States.ORCID 0000-0001-8118-5243
Yajie YinStanford University, Stanford, CA, United States.ORCID 0000-0002-2220-005X
Peter P DuStanford University, Stanford, CA, United States.ORCID 0000-0003-2652-0541
Colin J RaposoStanford University, Stanford, CA, United States.ORCID 0000-0002-5230-7931
Nofar GumpertWeizmann Institute of Science, Rehovot, Israel.ORCID 0009-0004-5589-6008
Michele WeltiUniversity of Zurich, Zurich, Switzerland.ORCID 0000-0001-7759-7288
Julia M Martínez GómezUniversity of Zurich, Zurich, Switzerland.ORCID 0000-0002-5684-3707
Federica SellaUniversity Hospital of Zurich, Zurich, Switzerland.ORCID 0000-0002-0805-0905
Elizabeta YakubovichWeizmann Institute of Science, Rehovot, Israel.ORCID 0009-0003-3030-6385
Irit OrrWeizmann Institute of Science, Israel.ORCID 0009-0006-0111-0481
Shifra Ben-DorWeizmann Institute of Science, Rehovot, Israel, Israel.ORCID 0000-0001-9604-1939
Roni OrenWeizmann Institute, Rehovot, Israel, Israel.ORCID 0000-0003-1228-412X
Liat Fellus-AlyagorWeizmann Institute, Rehovot, Israel, Israel.ORCID 0009-0001-9621-8068
Ofra GolaniWeizmann Institute of Science, Rehovot, Israel.ORCID 0000-0002-9793-236X
Ori Jacob BrennerWeizmann Institute of Science, Rehovot, Israel.ORCID 0000-0001-8221-7278
Tomer M SalameWeizmann Institute of Sciences, Rehovot, Israel, Israel.ORCID 0000-0003-4260-8738
Mirie ZerbibWeizmann Institute of Science, Rehovot, Israel, Israel.ORCID 0009-0008-4074-1344
Inna GoliandWeizmann Institute of Science, Israel.ORCID 0000-0002-1595-5366
Dean RanmarWeizmann Institute of Science, Israel.ORCID 0009-0009-1992-6819
Ilya SavchenkoWeizmann Institute of Science, Israel.ORCID 0009-0002-1709-1079
Nadav KetrarouWeizmann Institute of Science, Israel.ORCID 0009-0006-7608-9584
Alejandro A SchafferNational Cancer Institute, Bethesda, Maryland, United States.ORCID 0000-0002-2147-8033
Rony DahanWeizmann Institute of Science, Israel.ORCID 0000-0002-8420-7601
Mitchell P LevesqueUniversity of Zurich, Zurich, Switzerland.ORCID 0000-0001-5902-9420
Eytan RuppinNational Cancer Institute, Bethesda, MD, United States.ORCID 0000-0002-7862-3940
Ansuman T SatpathyStanford University, Stanford, CA, United States.ORCID 0000-0002-5167-537X
Yardena SamuelsWeizmann Institute of Science, Rehovot, Israel.ORCID 0000-0002-3349-7266

Funding

MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
Intramural NIH HHS Z99 CA999999NIAID NIH HHS T32 AI007290
6 · The paper itself

Abstract

Low intra-tumor heterogeneity (ITH) correlates with increased patient survival and immunotherapy response. However, even highly homogeneous tumors are variably aggressive, and the immunological factors impacting aggressiveness remain understudied. Here, we analyzed the mechanisms underlying immune escape in murine tumors with low ITH. We used immunophenotyping and single-cell RNA sequencing to compare the temporal growth of in-vivo transplanted, genetically similar rejected vs. non-rejected single-cell clones. Non-rejected clones showed high infiltration of tumor-associated macrophages (TAMs), lower T-cell infiltration, and increased T-cell exhaustion compared to rejected clones. Comparative analysis of rejection-associated gene expression programs, combined with in-vivo CRISPR knockout screens of candidate regulators, identified Mif (macrophage migration inhibitory factor) as a major contributor to immune rejection. Mif knockout resulted in smaller tumors and reduced TAM infiltration. These results were validated in melanoma patient data. Overall, our homogeneous tumor system can uncover factors regulating growth variability and identifies Mif as critical in aggressive melanoma.

Identifiers

PMID39715301
PMCPMC11873729

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.