Evidence map›Paper›PMID 39715247›Full record

ArticlePLoS neglected tropical diseases2024

Performance evaluation of nine reference centers and comparison of DNA extraction protocols for effective surveillance of Leishmania-infected Phlebotomine sand flies: Basis for technical recommendations.

Jorian Prudhomme, Aymeric Delabarre, Bulent Alten, Umut Berberoglu, Eduardo Berriatua, Gioia Bongiorno, José Manuel Cristovao, Maya Davidovich-Cohen, Trentina Di Muccio, Ozge Erisoz Kasap and 19 more

Abstract readComparative StudyMulticenter StudyEvaluation Study
In one paragraph

Article in PLoS neglected tropical diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Jorian PrudhommeUniv Rennes, Inserm, EHESP, Irset (Institut de Recherche en Santé Environnement Travail), UMR S 1085, Rennes, France.ORCID 0000-0002-3672-2692
Aymeric DelabarreUniv Rennes, Inserm, EHESP, Irset (Institut de Recherche en Santé Environnement Travail), UMR S 1085, Rennes, France.
Bulent AltenHacettepe University, Ankara, Turkey.
Umut BerberogluTurkish Ministry of Health, Ankara, Turkey.
Eduardo BerriatuaUniversity of Murcia, Murcia, Spain.
Gioia BongiornoIstituto Superiore di Sanità, Rome, Italy.
José Manuel CristovaoGlobal Health and Tropical Medicine, GHTM, LA-REAL, Instituto de Higiene e Medicina Tropical, Universidade NOVA de Lisboa, Lisbon, Portugal.
Maya Davidovich-CohenJerusalem Public Health Laboratories, Ministry of Health, Jerusalem, Israel.
Trentina Di MuccioIstituto Superiore di Sanità, Rome, Italy.
Ozge Erisoz KasapHacettepe University, Ankara, Turkey.
Eleonora FiorentinoIstituto Superiore di Sanità, Rome, Italy.
Oscar D KirsteinJerusalem Public Health Laboratories, Ministry of Health, Jerusalem, Israel.
Edwin KnihaInstitute of Specific Prophylaxis and Tropical Medicine, Center for Pathophysiology, Infectiology and Immunology, Medical University of Vienna, Vienna, Austria.
Carla MaiaGlobal Health and Tropical Medicine, GHTM, LA-REAL, Instituto de Higiene e Medicina Tropical, Universidade NOVA de Lisboa, Lisbon, Portugal.
Mesut MunganTurkish Ministry of Health, Ankara, Turkey.
Clara Muñoz-HernándezUniversity of Murcia, Murcia, Spain.
Muhammed NalçaciEge University Graduate School of Natural and Applied Sciences, Department of Biology, Bornova, Izmir, Türkiye.
Gizem Oguz KaskanHacettepe University, Ankara, Turkey.
Yusuf OzbelEge University Graduate School of Natural and Applied Sciences, Department of Biology, Bornova, Izmir, Türkiye.
Seray Ozensoy TozEge University Graduate School of Natural and Applied Sciences, Department of Biology, Bornova, Izmir, Türkiye.
Ricardo ParreiraGlobal Health and Tropical Medicine, GHTM, LA-REAL, Instituto de Higiene e Medicina Tropical, Universidade NOVA de Lisboa, Lisbon, Portugal.
Katharina PlatzgummerInstitute of Specific Prophylaxis and Tropical Medicine, Center for Pathophysiology, Infectiology and Immunology, Medical University of Vienna, Vienna, Austria.
Ceylan PolatHacettepe University, Ankara, Turkey.
José RisueñoUniversity of Murcia, Murcia, Spain.
Liora StudentskyJerusalem Public Health Laboratories, Ministry of Health, Jerusalem, Israel.
Gamze VarolTurkish Ministry of Health, Ankara, Turkey.
Julia WalochnikInstitute of Specific Prophylaxis and Tropical Medicine, Center for Pathophysiology, Infectiology and Immunology, Medical University of Vienna, Vienna, Austria.
Kardelen YetişmişEge University Graduate School of Natural and Applied Sciences, Department of Biology, Bornova, Izmir, Türkiye.
Florence Robert-GangneuxUniv Rennes, Inserm, EHESP, Irset (Institut de Recherche en Santé Environnement Travail), UMR S 1085, Rennes, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLeishmaniasis, caused by Leishmania protozoan parasites transmitted by Phlebotomine sand flies, is a significant public health concern in the Mediterranean basin. Effective monitoring of Leishmania-infected sand flies requires standardized tools for comparing their distribution and infection prevalence. Consistent quantitative real-time PCR (qPCR) parameters and efficient DNA extraction protocols are crucial for reliable results over time and across regions. However, the absence of standardized technical recommendations for Leishmania DNA detection hinders effective surveillance. This study aimed to compare different DNA extraction protocols and conduct a qPCR-based External Quality Assessment (EQA) through a multicenter study involving nine reference laboratories, with a focus on optimizing Leishmania DNA detection in sand fly. METHODOLOGY/PRINCIPAL

findingsEQA samples consisted of Leishmania infantum and L. major species, at concentrations ranging from 101 to 104 parasites/mL. All but one center detected all concentrations, demonstrating strong diagnostic proficiency. The ability to detect low concentrations highlighted the robustness of the qPCR assay used, though variations in Cq values indicated differences in sensitivity related to technical capabilities or DNA extraction kit performance. A comparative analysis of seven DNA extraction methods identified the EZ1 DSP Virus Kit and QIAamp DNA mini-kit as the most efficient, supporting their use in standardized protocols. The study also assessed the effects of lyophilization and shipment conditions, showing no significant compromise in Leishmania detection despite slight variations in Cq values. Experimentally infected sand flies were included to simulate field conditions, and all centers successfully detected positive samples with varying Cq values, probably reflecting differences in infection load. CONCLUSION AND SIGNIFICANCE: This study emphasizes the importance of standardized DNA extraction protocols and continuous quality assurance for accurate Leishmania DNA detection. The results highlight the superior performance of certain extraction kits and the need for ongoing technical training, essential for reliable leishmaniasis surveillance, particularly in field settings with low infection densities.

Indexed as

DNA, ProtozoanLeishmania infantumPsychodidaeReal-Time Polymerase Chain ReactionAnimalsLeishmaniaLeishmania majorLeishmaniasisDNA, Protozoan

Identifiers

PMID39715247
PMCPMC11706373

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.