Evidence map›Paper›PMID 39715023›Full record

ArticleChemistry (Weinheim an der Bergstrasse, Germany)2025

Biomimetic Pseudopeptides to Decipher the Interplay between Cu and Methionine-Rich Domains in Proteins.

Joel I Badillo-Gómez, Irene Suarez-Antuña, Ievgen Mazurenko, Frédéric Biaso, Jacques Pécaut, Elisabeth Lojou, Pascale Delangle, Sarah Hostachy

Abstract read
In one paragraph

Article in Chemistry (Weinheim an der Bergstrasse, Germany), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Joel I Badillo-GómezUniv. Grenoble Alpes, CEA, CNRS, Grenoble INP, IRIG, SyMMES, 38000, Grenoble, France.ORCID https://orcid.org/0000-0001-8802-9518
Irene Suarez-AntuñaUniv. Grenoble Alpes, CEA, CNRS, Grenoble INP, IRIG, SyMMES, 38000, Grenoble, France.ORCID https://orcid.org/0009-0002-3711-7109
Ievgen MazurenkoAix Marseille Univ, CNRS, Laboratoire de Bioénergétique et Ingénierie des Protéines, Institut de Microbiologie de la Méditerranée, 31 Chemin Aiguier, 13402, Marseille, France.ORCID https://orcid.org/0000-0003-2563-3130
Frédéric BiasoAix Marseille Univ, CNRS, Laboratoire de Bioénergétique et Ingénierie des Protéines, Institut de Microbiologie de la Méditerranée, 31 Chemin Aiguier, 13402, Marseille, France.ORCID https://orcid.org/0009-0002-5679-6629
Jacques PécautUniv. Grenoble Alpes, CEA, CNRS, Grenoble INP, IRIG, SyMMES, 38000, Grenoble, France.ORCID https://orcid.org/0000-0001-9666-3105
Elisabeth LojouAix Marseille Univ, CNRS, Laboratoire de Bioénergétique et Ingénierie des Protéines, Institut de Microbiologie de la Méditerranée, 31 Chemin Aiguier, 13402, Marseille, France.ORCID https://orcid.org/0000-0003-2593-4670
Pascale DelangleUniv. Grenoble Alpes, CEA, CNRS, Grenoble INP, IRIG, SyMMES, 38000, Grenoble, France.ORCID https://orcid.org/0000-0002-8546-9080
Sarah HostachyUniv. Grenoble Alpes, CEA, CNRS, Grenoble INP, IRIG, SyMMES, 38000, Grenoble, France.ORCID https://orcid.org/0000-0003-1867-9763

Funding

Agence Nationale de la Recherche ANR-11-LABX-003Agence Nationale de la Recherche ANR-15-IDEX-02Agence Nationale de la Recherche ANR-17-EURE-0003Agence Nationale de la Recherche ANR-21-CE44-0024
6 · The paper itself

Abstract

Maintaining tightly copper homeostasis is crucial for the survival of all living organisms, in particular microorganisms like bacteria. They have evolved a number of proteins to capture, transport and deliver Cu(I), while avoiding Fenton-like reactions. Some Cu proteins exhibit methionine-rich (Met-rich) domains, whose role remains elusive. In this work, we designed biomimetic compounds recapitulating the possible Cu(I) binding sites in these domains, in order to examine the parameters important for Cu(I) binding. Five different biomimetic pseudopeptides were synthesized, exhibiting either three methionines or two methionines and a third amino acid likely to be present in the Met-rich domain. The affinities for Cu(I) of these model binding sites were determined, as well as their redox properties and behavior in the presence of Cu(II). Our results highlight the importance of Met residues, and their abundance in Met-rich domains, to efficiently bind Cu(I) in the periplasmic space.

Indexed as

Biomimetic MaterialsCopperMethioninePeptidesBinding SitesBiomimeticsOxidation-ReductionProtein BindingProtein DomainsCopperMethioninePeptidesAffinityBioinorganic chemistryCopper bindingMethionineTripodal ligand

Identifiers

PMID39715023
PMCPMC11840665

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.