Evidence map›Paper›PMID 39714212›Full record

ArticlemSystems2025

Genome-resolved year-round dynamics reveal a broad range of giant virus microdiversity.

Yue Fang, Lingjie Meng, Jun Xia, Yasuhiro Gotoh, Tetsuya Hayashi, Keizo Nagasaki, Hisashi Endo, Yusuke Okazaki, Hiroyuki Ogata

Abstract read
In one paragraph

Article in mSystems, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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  3. Review
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yue Fang *Institute for Chemical Research, Kyoto University, Uji, Japan.
Lingjie Meng *Institute for Chemical Research, Kyoto University, Uji, Japan.ORCID 0000-0001-9937-8860
Jun XiaInstitute for Chemical Research, Kyoto University, Uji, Japan.
Yasuhiro GotohDepartment of Bacteriology, Faculty of Medical Sciences, Kyushu University, Fukuoka, Japan.
Tetsuya HayashiDepartment of Bacteriology, Faculty of Medical Sciences, Kyushu University, Fukuoka, Japan.
Keizo NagasakiFaculty of Science and Technology, Kochi University, Kochi, Japan.
Hisashi EndoInstitute for Chemical Research, Kyoto University, Uji, Japan.
Yusuke OkazakiInstitute for Chemical Research, Kyoto University, Uji, Japan.
Hiroyuki OgataInstitute for Chemical Research, Kyoto University, Uji, Japan.ORCID 0000-0001-6594-377X

Funding

Kyoto University | Institute for Chemical Research, Kyoto University (ICR) Nos. 2017-25Kyoto University | Institute for Chemical Research, Kyoto University (ICR) Nos. 2018-31Kyoto University | Institute for Chemical Research, Kyoto University (ICR) Nos. 2019-33Kyoto University | Institute for Chemical Research, Kyoto University (ICR) Nos. 2021-33MEXT | Japan Society for the Promotion of Science (JSPS) 16H06279MEXT | Japan Society for the Promotion of Science (JSPS) 21H05057MEXT | Japan Society for the Promotion of Science (JSPS) 22H00384MEXT | Japan Society for the Promotion of Science (JSPS) 22H00385Ministry of Education, Culture, Sports, Science and Technology (MEXT) 16H06429Ministry of Education, Culture, Sports, Science and Technology (MEXT) 16H06437Ministry of Education, Culture, Sports, Science and Technology (MEXT) 16K21723
6 · The paper itself

Abstract

Giant viruses are crucial for marine ecosystem dynamics because they regulate microeukaryotic community structure, accelerate carbon and nutrient cycles, and drive the evolution of their hosts through co-evolutionary processes. Previously reported long-term observations revealed that these viruses display seasonal fluctuations in abundance. However, the underlying genetic mechanisms driving such dynamics of these viruses remain largely unknown. In this study, we investigated the dynamics of giant viruses using time-series metagenomes from eutrophic coastal seawater samples collected over 20 months. A newly developed computational pipeline generated 1,065 high-quality genomes covering six major giant virus lineages. These genomic data revealed year-round recovery of the viral community structure at the study site and distinct dynamics of viral populations that were classified as persistent (

Indexed as

Genome, ViralGiant VirusesBiodiversityGenetic VariationMetagenomeMetagenomicsPhylogenySeasonsSeawatergiant virusmetagenomemicrodiversityNucleocytoviricota

Identifiers

PMID39714212
PMCPMC11748492

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.